; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G12400 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G12400
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLYR motif-containing protein 4
Genome locationClcChr04:25883157..25884267
RNA-Seq ExpressionClc04G12400
SyntenyClc04G12400
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5807263.1 putative complex 1 LYR protein [Helianthus annuus]9.5e-2979.07Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV
        MATPSRSE+L+LFRSLLR+ARQFPDYNIREYTKRRTIDAFR N+TLS+ SSI++A++ G++QL+VAKRQA+VYSLYAPK KSIMD+
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV

KAG6607477.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3390.8Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN
        MA PSRSE+L+LFRSLLR ARQFPDYNIREYTKRRTIDAFRENQ+LSD SSISS YAGGKAQLEVAKRQALVYSLYAPK KSIMDVN
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN

KGN64034.1 hypothetical protein Csa_014098 [Cucumis sativus]3.7e-3389.66Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN
        MATPS SE+LSLFRSLLR ARQFPDYNIREY KRRTID+FRENQTLSDASSISS YAGG+AQLEVAKRQA+VYSLYAPK KSIMDVN
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN

XP_022137452.1 LYR motif-containing protein 4 [Momordica charantia]1.1e-3289.77Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL
        MATPSRSE+LSLFRSLLR ARQF DYNIREYTKRR IDAFREN++LSD SSISSAYAGGKAQLEVAKRQALVYSLYAPK KSIMDV L
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL

XP_038894896.1 LYR motif-containing protein 4 [Benincasa hispida]4.7e-3696.59Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL
        MATPSRSEVLSLFRSLLR ARQFPDYNIREYTKRRTIDAFRENQ+LSDASSISSAYAGGKAQLEVAKRQALVYSLYAPK KSIMDVNL
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL

TrEMBL top hitse value%identityAlignment
A0A0A0LST7 Uncharacterized protein1.8e-3389.66Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN
        MATPS SE+LSLFRSLLR ARQFPDYNIREY KRRTID+FRENQTLSDASSISS YAGG+AQLEVAKRQA+VYSLYAPK KSIMDVN
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN

A0A1S3XFP4 LYR motif-containing protein 41.5e-2773.56Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN
        MA+PSR EVL+LFRSLL+ ARQFPDYNIREYTKRRTID FR+N+ LSD S +++A++ G+AQLEVAKRQA+VYSLYAPK KS+M++N
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVN

A0A251UU63 Putative complex 1 LYR protein4.6e-2979.07Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV
        MATPSRSE+L+LFRSLLR+ARQFPDYNIREYTKRRTIDAFR N+TLS+ SSI++A++ G++QL+VAKRQA+VYSLYAPK KSIMD+
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV

A0A2J6KBZ0 Uncharacterized protein3.9e-2877.38Show/hide
Query:  TPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV
        TPSR+E+++LFRSLLR+ARQFPDYNIREYTKRRTIDAFR+N+TLS+ SSI++A+  GK+QL+VAKRQA+VYSLYAPK KSIMD+
Subjt:  TPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDV

A0A6J1C8A4 LYR motif-containing protein 45.2e-3389.77Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL
        MATPSRSE+LSLFRSLLR ARQF DYNIREYTKRR IDAFREN++LSD SSISSAYAGGKAQLEVAKRQALVYSLYAPK KSIMDV L
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL

SwissProt top hitse value%identityAlignment
B5FZA8 LYR motif-containing protein 42.1e-1045.45Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA
        MA  SR++VL L+R+LLR +++F  YN R Y  RR  DAFREN+ ++D+  I       KA LEV +RQ  +  +YA
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA

B5XD90 LYR motif-containing protein 4B1.2e-0735.44Show/hide
Query:  SEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMD
        ++VLSL+R L++ + +FP YN R Y  RR  DAFR N+++ D   +      G+  L++ +RQ  +  +Y P  K+I++
Subjt:  SEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMD

Q0VCG0 LYR motif-containing protein 41.2e-0738.96Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA
        MA  SR++VL L+R++LR +++F  YN R Y  RR  DAFREN+ + D   I +     K  L + +RQ  +  +Y+
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA

Q8K215 LYR motif-containing protein 41.9e-0840.26Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA
        MA  SR++VL L+R+++R ++ F  YN R Y  RR  DAFREN+ + D   I +     K  LE+ +RQ  +  LY+
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA

Q9HD34 LYR motif-containing protein 41.1e-0842.86Show/hide
Query:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA
        MA  SR++VLSL+R++LR +++F  YN R Y  RR  DAFREN+ + D   I +     K  L V +RQ  +  LY+
Subjt:  MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYA

Arabidopsis top hitse value%identityAlignment
AT5G61220.1 LYR family of Fe/S cluster biogenesis protein9.1e-2263.1Show/hide
Query:  SRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL
        S SEVLSL R+LLRA RQFPDYNIREY+KRRT+D FR N+ L+D S ++ AYA  K QL VA+R   VY  Y PK K+IM+V L
Subjt:  SRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCGTCGAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTGCTGCGAGCGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCAT
CGATGCCTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCAATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACT
CTCTTTACGCACCTAAGGCCAAGAGTATCATGGATGTCAACCTCTGA
mRNA sequenceShow/hide mRNA sequence
GAAAATTACCCCCATTAGTGGATCATGCTCTTCATTCTGACTCTTTTTAGTTTGGTTGGTAGTTGTTTAGTTGATGGTTGTTGTAAAAATAAATAAATAAAAACTCCATC
GAATTTTCCCCTGTACCCAACAAAACCAGAAACTTCCGCATTTTTATCCTCTGCTTCTTCTCTTCTCTCTACCCTCGTCTCTTCCTCCATAGATGGCAACTCCGTCGAGG
TCTGAGGTCCTCTCGCTCTTTCGTTCTCTGCTGCGAGCGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCATCGATGCCTTCCGAGAAAA
TCAGACCCTCTCCGACGCTTCATCAATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCACCTAAGG
CCAAGAGTATCATGGATGTCAACCTCTGATTTCCACTTTTTTTTTTTTTTTTTTGGTTCTATGAATTTGTAGTATTTGAGAATTTTTGTGAGAATTGAACTGTATATTGA
CATTCTGCTGTTATCAACTATGAGCAAAGTTTTTTCCATCCCATTCTGAATTCTCTTGCGAGCTTAATTCCGAAAGGAAAATTAGGGATTTTTTTTTCCTTGTCCCCAAT
TTATCAAGTTTGAGTCCTGTTATGATGGATTGGTGAATTTTCTCTTCTGGGTTTAGTAATGTCTGGTGCCTCTGAAGATCATCCAATGTGGAATTCCGTTTGACAGATAA
TATCAGCATGAGCCACTTTCTATGCTATGCTAAAAAAGAGGGAAGTTCTGTGTGGACTTGGATGACAATCCTGTTACTTGATGAAGAAATACTTTGTGTTTTAGGTTTCA
ACATCTTAGCTCAATCAAGAATTGGTTGCTCTGAATTGTTTTTAGGCATATGTCAATAGTTTCTTTGGTATCCTGAACTAGAATTGATTTGCCCCGTTTCCATGAACTTA
TTTGACCTTCTTTTGAGCTCATATCAGCTTGAAAGTATGGAAAGTACTTGTTTGCTTAGATTATATTGGCAAAAACTTTGCATTTCAGTTGTTTTTAAAGATAGCATCAT
TGCATCTTTGT
Protein sequenceShow/hide protein sequence
MATPSRSEVLSLFRSLLRAARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL