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Clc04G12930 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G12930
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription factor PRE5-like
Genome locationClcChr04:26216883..26217516
RNA-Seq ExpressionClc04G12930
SyntenyClc04G12930
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584448.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2682.28Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASS L DDQL+NL+ +LQTLLP LNH    STVST EILKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVK LL
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

KAG7020038.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2683.54Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASS L DDQL+NL+ +LQTLLP LNH    STVST EILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]4.8e-2781.48Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL
        MASSKLGD++L+NL+ KL+TLLP LNHK D+S+  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVKDLL+
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]2.8e-2783.75Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASSKLGDD+L+NL+ KLQTLLP LNHK  +S+ VS  EILKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVKDLL
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

XP_038895474.1 transcription factor PRE5-like [Benincasa hispida]2.1e-2780.72Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDS---TVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL
        MASSKL DD LQNL+FKLQTLLPHLN K D+    +VS  +ILKETCDYIKKLQREVDDLSERLWKQLDSMGVD EMVKDL+L
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDS---TVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein1.4e-2783.75Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASSKLGDD+L+NL+ KLQTLLP LNHK  +S+ VS  EILKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVKDLL
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

A0A1S3B0J1 transcription factor PRE5-like2.3e-2781.48Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL
        MASSKLGD++L+NL+ KL+TLLP LNHK D+S+  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVKDLL+
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL

A0A5A7SZP9 Transcription factor PRE5-like2.3e-2781.48Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL
        MASSKLGD++L+NL+ KL+TLLP LNHK D+S+  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVKDLL+
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL

A0A5B6V213 Transcription factor ILI3-like4.7e-1254.88Show/hide
Query:  ASSKLGDDQLQNLIFKLQTLLPHLNH-KSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGV---DFEMVKDLL
        AS+K+ DD+L  LI +L TLLP LNH +   ++ ST +ILKETC YI++LQ+EVDDLSERL + LDSM +   D E + +LL
Subjt:  ASSKLGDDQLQNLIFKLQTLLPHLNH-KSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGV---DFEMVKDLL

A0A5D3BKI2 Transcription factor PRE5-like1.4e-2481.33Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM
        MASSKLGD++L+NL+ KL+TLLP LNHK D+S+  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI64.7e-0941.98Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLLL
        SS++ D+Q+ +L+ KLQ LLP    +S+D   S+  +L+ETC+YI+ L +EVDDLSERL + L   D       +++ LL+
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLLL

Q8GW32 Transcription factor PRE61.9e-1043.75Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL
        SS++ DDQ+ +L+ KLQ L+P L  +  D  VS  ++L+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LL
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL

Q9CA64 Transcription factor PRE34.2e-1050.85Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERL
        +S++ +DQ+ +LI KLQ LLP L        VS   +L++TC+YI+ L REVDDLSERL
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERL

Q9LJX1 Transcription factor PRE51.1e-1044.93Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD
        +S++ DDQ+ +L+ KL+  LP ++ +     VS  ++L+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD

Q9LXG5 Transcription factor PRE25.5e-1043.28Show/hide
Query:  ASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSM
        +SS++ DDQ+ +LI KL+  +P +      +TVS  ++L+ETC+YI+ L +E DDLS+RL + L+S+
Subjt:  ASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.3e-1143.75Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL
        SS++ DDQ+ +L+ KLQ L+P L  +  D  VS  ++L+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LL
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 13.0e-1150.85Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERL
        +S++ +DQ+ +LI KLQ LLP L        VS   +L++TC+YI+ L REVDDLSERL
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein7.9e-1244.93Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD
        +S++ DDQ+ +L+ KL+  LP ++ +     VS  ++L+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD

AT3G47710.1 BANQUO 37.4e-1039.24Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSM-GVDFEMVKDLLL
        +S + D+Q+ +L+ +L  LLP L +      VS   +L+ETC YI+ L +EVDDLSERL + L+S       +++ LL+
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSM-GVDFEMVKDLLL

AT5G15160.1 BANQUO 23.9e-1143.28Show/hide
Query:  ASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSM
        +SS++ DDQ+ +LI KL+  +P +      +TVS  ++L+ETC+YI+ L +E DDLS+RL + L+S+
Subjt:  ASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCAAATTAGGCGACGACCAGCTTCAAAATCTCATCTTCAAATTACAAACTTTGCTCCCTCACCTCAACCATAAGTCCGACGATTCTACGGTATCGACAGT
GGAGATATTGAAGGAAACGTGTGATTATATAAAGAAATTGCAGAGGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAGA
TGGTTAAGGATCTTCTTCTTACTTAA
mRNA sequenceShow/hide mRNA sequence
CCTTCTTATATTTCCTCCCTTTTTAAAACCTTCACTCTTCCCCCTCCCCTAAAACACCATTCCTTTCCAATTCTCCTTCTTTCATTCATGGCTTCCTCCAAATTAGGCGA
CGACCAGCTTCAAAATCTCATCTTCAAATTACAAACTTTGCTCCCTCACCTCAACCATAAGTCCGACGATTCTACGGTATCGACAGTGGAGATATTGAAGGAAACGTGTG
ATTATATAAAGAAATTGCAGAGGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAGATGGTTAAGGATCTTCTTCTTACT
TAAAAAGAAATATTTTGAGATGAATTTTTCTTACTCTCATCACTGTGTGTTTGTATTTTGAAACTGATATGTTTGGTCTCAGCATTACCAACCGACAGTTGAGAGAGAAA
AGTGGTGGATTCTATAATCTATATTAAATGTATTTTTCTATTTTTATCCTTCTTCTATATATGTTGGTCTCATGTTTAATATATGTATATCTAATTCTATGCAACACCTT
TTCC
Protein sequenceShow/hide protein sequence
MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTVEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLLT