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Clc04G13205 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G13205
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionpentatricopeptide repeat-containing protein isoform X2
Genome locationClcChr04:26427066..26427299
RNA-Seq ExpressionClc04G13205
SyntenyClc04G13205
Gene Ontology termsNA
InterPro domainsIPR002885 - Pentatricopeptide repeat


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148338.1 pentatricopeptide repeat-containing protein At2g34400 [Cucumis sativus]3.2e-0465.79Show/hide
Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG
        M+ GY+KM++ GEAVGLFREMMEAGF+P++M LV  +G
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG

XP_008451433.1 PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Cucumis melo]3.2e-0465.79Show/hide
Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG
        M+ GY+KM++ GEAVGLFREMMEAGF+P++M LV  +G
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG

XP_018857160.2 pentatricopeptide repeat-containing protein At2g34400 isoform X2 [Juglans regia]4.1e-0453.57Show/hide
Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG
        M+ GY+KM Y  +AVGLFREMME GFEPD+M LV  +G   D       + DL LG
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG

XP_038889591.1 pentatricopeptide repeat-containing protein At2g34400 [Benincasa hispida]2.4e-0465.79Show/hide
Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG
        M+ GY+KM++ GEAVGLFREMMEAGF+P++M LV  +G
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG

XP_042988533.1 pentatricopeptide repeat-containing protein At2g34400 isoform X2 [Carya illinoinensis]4.1e-0453.57Show/hide
Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG
        M+ GY+KM Y  +AVGLFREMME GFEPD+M LV  +G   D       + DL LG
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG

TrEMBL top hitse value%identityAlignment
A0A0A0LMG0 Uncharacterized protein1.5e-0465.79Show/hide
Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG
        M+ GY+KM++ GEAVGLFREMMEAGF+P++M LV  +G
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG

A0A1Q3B4U7 PPR domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein3.4e-0468.42Show/hide
Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG
        M+ GY+KM + GEAVGLFR MMEAGFEPD+M LV  +G
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG

A0A1S3BRJ2 pentatricopeptide repeat-containing protein At2g344001.5e-0465.79Show/hide
Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG
        M+ GY+KM++ GEAVGLFREMMEAGF+P++M LV  +G
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG

A0A2I4HLW6 pentatricopeptide repeat-containing protein At2g34400 isoform X12.0e-0453.57Show/hide
Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG
        M+ GY+KM Y  +AVGLFREMME GFEPD+M LV  +G   D       + DL LG
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG

A0A2I4HLZ4 pentatricopeptide repeat-containing protein At2g34400 isoform X22.0e-0453.57Show/hide
Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG
        M+ GY+KM Y  +AVGLFREMME GFEPD+M LV  +G   D       + DL LG
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATG
GAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGT
GGGAGCGTTGGTGATGGAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATG
GAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGT
GGGAGCGTTGGTGATGGAGAATGA
Protein sequenceShow/hide protein sequence
MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLGGVWRAGGFETRHLGGSVGDGE