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Clc05G00120 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G00120
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTranscription factor 25
Genome locationClcChr05:98749..100028
RNA-Seq ExpressionClc05G00120
SyntenyClc05G00120
Gene Ontology termsNA
InterPro domainsIPR006994 - TCF25/Rqc1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048800.1 transcription factor 25 [Cucumis melo var. makuwa]5.0e-3661.59Show/hide
Query:  LTNPLEVLLE--SLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIFLGRPILLVH--QTIGLVGWFSFHGVFGTRNGYHYF
        L  PL+VLL+  SLDI+PSA+SSPQ PEKAKNGAEE   GKQCMPS LE        G ++  IF  +  L     +++  +GWFSFHGVFG        
Subjt:  LTNPLEVLLE--SLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIFLGRPILLVH--QTIGLVGWFSFHGVFGTRNGYHYF

Query:  RYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
        +   P    EAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
Subjt:  RYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA

XP_008437758.1 PREDICTED: LOW QUALITY PROTEIN: transcription factor 25 [Cucumis melo]1.4e-3556.42Show/hide
Query:  LTNPLEVLLE--SLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQTIGL
        L  PL+VLL+  SLDI+PSA+SSPQ PEKAKNGAEE   GKQCMPS LE        G ++  IF                      GR +  + +   L
Subjt:  LTNPLEVLLE--SLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQTIGL

Query:  VG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
        V     W  + G        +RNGYHYFRYVH PSY EAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
Subjt:  VG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA

XP_022935196.1 transcription factor 25 [Cucurbita moschata]7.2e-3554.4Show/hide
Query:  KSLTNPLEVLLE--SLDINPSALSSPQDPEKAKNGA-EERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQT
        K L  PL+V+LE  SLD+NPSALS  QDPEKAK+   EERN GKQC+ S LE        G ++  IF                      GR +  + + 
Subjt:  KSLTNPLEVLLE--SLDINPSALSSPQDPEKAKNGA-EERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQT

Query:  IGLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
          LV     W  + G        T+NGYHYFRYVHPPSYVEAQKAFEAA+SIHDLNGIASILL+HPYHLDSLITMAEYFKFA
Subjt:  IGLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA

XP_023521959.1 transcription factor 25-like, partial [Cucurbita pepo subsp. pepo]7.2e-3554.4Show/hide
Query:  KSLTNPLEVLLE--SLDINPSALSSPQDPEKAKNGA-EERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQT
        K L  PL+V+LE  SLD+NPSALS  QDPEKAK+   EERN GKQC+ S LE        G ++  IF                      GR +  + + 
Subjt:  KSLTNPLEVLLE--SLDINPSALSSPQDPEKAKNGA-EERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQT

Query:  IGLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
          LV     W  + G        T+NGYHYFRYVHPPSYVEAQKAFEAA+SIHDLNGIASILL+HPYHLDSLITMAEYFKFA
Subjt:  IGLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA

XP_038893357.1 transcription factor 25 [Benincasa hispida]2.4e-3857.46Show/hide
Query:  KSLTNPLEVLLESLDIN--PSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQTI
        K L  PL+VLLESL ++  PSALSS Q PEKAKNGAEERNCGKQ MPS LE        G ++  IF                      GR +  + +  
Subjt:  KSLTNPLEVLLESLDIN--PSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQTI

Query:  GLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
         LV     W  + G        TRNGYHYFRYVHPPSYVEAQKA+EAARSIHDLNGIASILL+HPYHLDSLITMAEYFKFA
Subjt:  GLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA

TrEMBL top hitse value%identityAlignment
A0A0A0L889 Uncharacterized protein4.5e-3555.25Show/hide
Query:  KSLTNPLEVLLE--SLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQTI
        K L  PL+V+L+  SLDINPSAL SPQ P+KAKNG EE    KQCMPS LE        G ++  IF                      GR +  + +  
Subjt:  KSLTNPLEVLLE--SLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQTI

Query:  GLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
         LV     W  + G        +RNGYHYFRYVH PSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
Subjt:  GLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA

A0A1S3AUW3 LOW QUALITY PROTEIN: transcription factor 257.0e-3656.42Show/hide
Query:  LTNPLEVLLE--SLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQTIGL
        L  PL+VLL+  SLDI+PSA+SSPQ PEKAKNGAEE   GKQCMPS LE        G ++  IF                      GR +  + +   L
Subjt:  LTNPLEVLLE--SLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQTIGL

Query:  VG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
        V     W  + G        +RNGYHYFRYVH PSY EAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
Subjt:  VG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA

A0A5A7U072 Transcription factor 252.4e-3661.59Show/hide
Query:  LTNPLEVLLE--SLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIFLGRPILLVH--QTIGLVGWFSFHGVFGTRNGYHYF
        L  PL+VLL+  SLDI+PSA+SSPQ PEKAKNGAEE   GKQCMPS LE        G ++  IF  +  L     +++  +GWFSFHGVFG        
Subjt:  LTNPLEVLLE--SLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIFLGRPILLVH--QTIGLVGWFSFHGVFGTRNGYHYF

Query:  RYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
        +   P    EAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
Subjt:  RYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA

A0A6J1F3V8 transcription factor 253.5e-3554.4Show/hide
Query:  KSLTNPLEVLLE--SLDINPSALSSPQDPEKAKNGA-EERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQT
        K L  PL+V+LE  SLD+NPSALS  QDPEKAK+   EERN GKQC+ S LE        G ++  IF                      GR +  + + 
Subjt:  KSLTNPLEVLLE--SLDINPSALSSPQDPEKAKNGA-EERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQT

Query:  IGLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
          LV     W  + G        T+NGYHYFRYVHPPSYVEAQKAFEAA+SIHDLNGIASILL+HPYHLDSLITMAEYFKFA
Subjt:  IGLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA

A0A6J1IDI7 transcription factor 251.7e-3453.85Show/hide
Query:  KSLTNPLEVLLE--SLDINPSALSSPQDPEKAKNGA-EERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQT
        K L  PL+V+LE  SLD+NP ALS  QDPEKAK+   EERN GKQC+ S LE        G ++  IF                      GR +  + + 
Subjt:  KSLTNPLEVLLE--SLDINPSALSSPQDPEKAKNGA-EERNCGKQCMPSFLEAVVLDTCVGEDVLTIF---------------------LGRPILLVHQT

Query:  IGLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA
          LV     W  + G        T+NGYHYFRYVHPPSYVEAQKAFEAA+SIHDLNGIASILL+HPYHLDSLITMAEYFKFA
Subjt:  IGLVG----WFSFHGVFG-----TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G46900.1 CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink).2.2e-1863.79Show/hide
Query:  TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKF
        T++G +YFRY H  SY +AQ+AF+AA++IHDLNG+AS+L+++PYH++SLITMA+YFKF
Subjt:  TRNGYHYFRYVHPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAATTCTTCTTCCACCACAGATAAAATCCTTGACAAACCCCTTGGAAGTGCTTCTAGAATCTCTGGATATTAACCCTTCTGCTTTAAGCAGCCCACAGGACCCTGA
GAAAGCAAAAAATGGTGCAGAAGAAAGGAATTGTGGAAAACAATGCATGCCTTCATTCTTAGAAGCAGTAGTTCTAGACACCTGCGTGGGGGAAGACGTGTTAACCATCT
TTCTAGGAAGACCTATCTTGTTAGTCCATCAGACCATTGGCCTCGTTGGATGGTTCTCTTTCCATGGAGTTTTTGGGACAAGGAATGGATATCACTACTTCAGATATGTA
CACCCGCCATCCTATGTTGAAGCTCAGAAAGCATTTGAAGCCGCCAGATCTATTCATGATCTCAATGGCATTGCCAGTATTCTGTTGTACCACCCATATCACCTGGATTC
ACTTATAACGATGGCGGAGTATTTTAAATTTGCGGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAATTCTTCTTCCACCACAGATAAAATCCTTGACAAACCCCTTGGAAGTGCTTCTAGAATCTCTGGATATTAACCCTTCTGCTTTAAGCAGCCCACAGGACCCTGA
GAAAGCAAAAAATGGTGCAGAAGAAAGGAATTGTGGAAAACAATGCATGCCTTCATTCTTAGAAGCAGTAGTTCTAGACACCTGCGTGGGGGAAGACGTGTTAACCATCT
TTCTAGGAAGACCTATCTTGTTAGTCCATCAGACCATTGGCCTCGTTGGATGGTTCTCTTTCCATGGAGTTTTTGGGACAAGGAATGGATATCACTACTTCAGATATGTA
CACCCGCCATCCTATGTTGAAGCTCAGAAAGCATTTGAAGCCGCCAGATCTATTCATGATCTCAATGGCATTGCCAGTATTCTGTTGTACCACCCATATCACCTGGATTC
ACTTATAACGATGGCGGAGTATTTTAAATTTGCGGTGTGA
Protein sequenceShow/hide protein sequence
MRILLPPQIKSLTNPLEVLLESLDINPSALSSPQDPEKAKNGAEERNCGKQCMPSFLEAVVLDTCVGEDVLTIFLGRPILLVHQTIGLVGWFSFHGVFGTRNGYHYFRYV
HPPSYVEAQKAFEAARSIHDLNGIASILLYHPYHLDSLITMAEYFKFAV