CuGenDBv2

Gene ID	Clc05G00230
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Genome location	ClcChr05:170174..170749
RNA-Seq Expression	Clc05G00230
Synteny	Clc05G00230
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034360.1 reverse transcriptase [Cucumis melo var. makuwa]

7.0e-25

45.29

Show/hide

Query:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV
        MT QLFFKH+VKLW V  SI+SDRD RF  +FWTELF +LG++LNISSSYHPQTDGQTERFN   +      V ++++   +L  +   C    T+ +  
Subjt:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV

Query:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG
        R+    +S            P   K+P+ L                LEKA KRMKKWAD KRRPL+F+ G
Subjt:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG

KAA0046544.1 reverse transcriptase [Cucumis melo var. makuwa]

7.0e-25

50.31

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Query:  TTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFN----------ICSKTKRVPSQ---ERRPSRLCVVD----
        T QLFFKHIVKLW V  SI+SDRD RF  +FWTELF  LG++LNISSSYHPQTDGQTERFN            S T R P +    R+P    +VD    
Subjt:  TTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFN----------ICSKTKRVPSQ---ERRPSRLCVVD----

Query:  -SSCHTLLTTHTWVRALRCTISPENRKSPRKLCVCLEKALKRMKKWADMKRRPLKFQLG
          S   L  T  W            R+        LEKA KRMKKWAD KRRPL+F+ G
Subjt:  -SSCHTLLTTHTWVRALRCTISPENRKSPRKLCVCLEKALKRMKKWADMKRRPLKFQLG

KAA0053507.1 reverse transcriptase [Cucumis melo var. makuwa]

5.7e-27

53.06

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Query:  TTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFN--ICSKTKRVPSQERRPSRLCVVDSSCHTLLTTHTWV--
        T QLFFKH+VKLW V  SI+SDRD RF  +FWTELF  LG++LNISSSYHPQTDGQTERFN   C   +   S  R P  +          L  H +V  
Subjt:  TTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFN--ICSKTKRVPSQERRPSRLCVVDSSCHTLLTTHTWV--

Query:  --RALRCTISPENRKSPRKLCVCLEKALKRMKKWADMKRRPLKFQLG
          +AL  T   E R++       LEKA KRMKKWAD KRRPL+F+ G
Subjt:  --RALRCTISPENRKSPRKLCVCLEKALKRMKKWADMKRRPLKFQLG

TYK01597.1 reverse transcriptase [Cucumis melo var. makuwa]

1.2e-24

45.88

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Query:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV
        MT QLFFKH+VKLW V  SI+SDRD RF  +FWTELF  LG++LNISSSYHPQTDGQTERFN   +      V ++++   +L  V   C    T+ +  
Subjt:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV

Query:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG
        R+    +S            P   K+P+ L                LEKA KRMKKWAD KRRPL+F+ G
Subjt:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG

TYK15559.1 reverse transcriptase [Cucumis melo var. makuwa]

7.0e-25

45.29

Show/hide

Query:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV
        MT QLFFKH+VKLW V  SI+SDRD RF  +FWTELF +LG++LNISSSYHPQTDGQTERFN   +      V ++++   +L  +   C    T+ +  
Subjt:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV

Query:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG
        R+    +S            P   K+P+ L                LEKA KRMKKWAD KRRPL+F+ G
Subjt:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7STR0 Reverse transcriptase

3.4e-25

45.29

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Query:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV
        MT QLFFKH+VKLW V  SI+SDRD RF  +FWTELF +LG++LNISSSYHPQTDGQTERFN   +      V ++++   +L  +   C    T+ +  
Subjt:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV

Query:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG
        R+    +S            P   K+P+ L                LEKA KRMKKWAD KRRPL+F+ G
Subjt:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG

A0A5A7TU11 Reverse transcriptase

3.4e-25

50.31

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Query:  TTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFN----------ICSKTKRVPSQ---ERRPSRLCVVD----
        T QLFFKHIVKLW V  SI+SDRD RF  +FWTELF  LG++LNISSSYHPQTDGQTERFN            S T R P +    R+P    +VD    
Subjt:  TTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFN----------ICSKTKRVPSQ---ERRPSRLCVVD----

Query:  -SSCHTLLTTHTWVRALRCTISPENRKSPRKLCVCLEKALKRMKKWADMKRRPLKFQLG
          S   L  T  W            R+        LEKA KRMKKWAD KRRPL+F+ G
Subjt:  -SSCHTLLTTHTWVRALRCTISPENRKSPRKLCVCLEKALKRMKKWADMKRRPLKFQLG

A0A5A7UG93 Reverse transcriptase

2.8e-27

53.06

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Query:  TTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFN--ICSKTKRVPSQERRPSRLCVVDSSCHTLLTTHTWV--
        T QLFFKH+VKLW V  SI+SDRD RF  +FWTELF  LG++LNISSSYHPQTDGQTERFN   C   +   S  R P  +          L  H +V  
Subjt:  TTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFN--ICSKTKRVPSQERRPSRLCVVDSSCHTLLTTHTWV--

Query:  --RALRCTISPENRKSPRKLCVCLEKALKRMKKWADMKRRPLKFQLG
          +AL  T   E R++       LEKA KRMKKWAD KRRPL+F+ G
Subjt:  --RALRCTISPENRKSPRKLCVCLEKALKRMKKWADMKRRPLKFQLG

A0A5D3BQE4 Reverse transcriptase

5.8e-25

45.88

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Query:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV
        MT QLFFKH+VKLW V  SI+SDRD RF  +FWTELF  LG++LNISSSYHPQTDGQTERFN   +      V ++++   +L  V   C    T+ +  
Subjt:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV

Query:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG
        R+    +S            P   K+P+ L                LEKA KRMKKWAD KRRPL+F+ G
Subjt:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG

A0A5D3CZE9 Reverse transcriptase

3.4e-25

45.29

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Query:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV
        MT QLFFKH+VKLW V  SI+SDRD RF  +FWTELF +LG++LNISSSYHPQTDGQTERFN   +      V ++++   +L  +   C    T+ +  
Subjt:  MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSK---TKRVPSQERRPSRLCVVDSSCHTLLTTHTWV

Query:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG
        R+    +S            P   K+P+ L                LEKA KRMKKWAD KRRPL+F+ G
Subjt:  RALRCTIS------------PENRKSPRKL-------------CVCLEKALKRMKKWADMKRRPLKFQLG

SwissProt top hits

e value

%identity

Alignment

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.9e-04

44.64

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Query:  LFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTER
        L F++I        +I SDRD R T+  + EL + LG    +SS+ HPQTDGQ+ER
Subjt:  LFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTER

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.9e-04

44.64

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Query:  LFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTER
        L F++I        +I SDRD R T+  + EL + LG    +SS+ HPQTDGQ+ER
Subjt:  LFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTER

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACGACTCAGTTGTTCTTCAAGCACATTGTGAAACTATGGAGTGTCTCTGTCAGTATCATTAGTGATCGTGATGCAAGATTCACTAGTACATTTTGGACGGAACTATT
TCGGATATTGGGTTCGACACTGAATATTTCATCCAGTTATCATCCACAGACTGATGGACAGACGGAACGCTTCAACATATGCTCGAAAACCAAAAGAGTTCCTTCACAAG
AAAGACGCCCTTCGAGATTGTGTGTGGTAGATAGCTCATGCCACACGTTATTGACCACCCATACGTGGGTAAGAGCCCTCAGGTGCACAATTTCACCAGAGAATAGAAAG
AGTCCTCGGAAGTTGTGTGTGTGTCTAGAGAAGGCATTGAAGCGCATGAAGAAGTGGGCAGATATGAAACGCAGACCCCTCAAGTTTCAATTAGGGGTGTGCACGGTTCG
GTTCGGTCTGGTTTTTAGCCGAACCATGAACCAAACCGAAGTTATCCGTTCCCATTGA

mRNA sequence

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Protein sequence

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MTTQLFFKHIVKLWSVSVSIISDRDARFTSTFWTELFRILGSTLNISSSYHPQTDGQTERFNICSKTKRVPSQERRPSRLCVVDSSCHTLLTTHTWVRALRCTISPENRK
SPRKLCVCLEKALKRMKKWADMKRRPLKFQLGVCTVRFGLVFSRTMNQTEVIRSH

Clc05G00230 (gene) of Watermelon (cordophanus) v2 genome