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Clc05G00345 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G00345
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUvrABC system protein C
Genome locationClcChr05:247120..247985
RNA-Seq ExpressionClc05G00345
SyntenyClc05G00345
Gene Ontology termsNA
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597014.1 hypothetical protein SDJN03_10194, partial [Cucurbita argyrosperma subsp. sororia]3.9e-5563.93Show/hide
Query:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNP-------SLEPCTLVSTPYRMSTA
        MGNC+LK  GER ++VKVVT++GGIMELY PITAECITGEYPGHAIFKSR+IFSE L HK+EL  GQVYYLLPLNP         +  ++VSTPYRMST 
Subjt:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNP-------SLEPCTLVSTPYRMSTA

Query:  DTQ-----------PKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEG
        ++Q                P Y++ GVWKV LVICP+QLS+IL   NRT+ELIENVRTVAKCGN + SAA+SDHSSVAG  +G
Subjt:  DTQ-----------PKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEG

KAG7028490.1 hypothetical protein SDJN02_09671, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-5563.93Show/hide
Query:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNP-------SLEPCTLVSTPYRMSTA
        MGNC+LK  GER ++VKVVT++GGIMELY PITAECITGEYPGHAIFKSR+IFSE L HK+EL  GQVYYLLPLNP         +  ++VSTPYRMST 
Subjt:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNP-------SLEPCTLVSTPYRMSTA

Query:  DTQ-----------PKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEG
        ++Q                P Y++ GVWKV LVICP+QLS+IL   NRT+ELIENVRTVAKCGN + SAA+SDHSSVAG  +G
Subjt:  DTQ-----------PKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEG

XP_011650622.1 uncharacterized protein LOC105434805 [Cucumis sativus]1.2e-6476.16Show/hide
Query:  MGNCMLKGGG------ERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSL--EPCTLVSTPYRMST
        MGNCMLKG G      E  ++VKVVT+ GGIMELYTPITAECITGEYPGHAIFK+R+IFS+ALHHKEEL+GGQVYYLLPLN  +     +++STPYRMST
Subjt:  MGNCMLKGGG------ERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSL--EPCTLVSTPYRMST

Query:  ADTQPKPP---LPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAG
        A++Q KP     P YNNAGVWKVNLVICPQQLSQILS +NRTQELI+NVRTVAKCGNALESA+NSDHSSVAG
Subjt:  ADTQPKPP---LPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAG

XP_016898947.1 PREDICTED: uncharacterized protein LOC107990386 [Cucumis melo]3.8e-6677.91Show/hide
Query:  MGNCMLKGGG------ERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSL--EPCTLVSTPYRMST
        MGNC+LKG G      E  +MVKVVT+ GGIMELYTPITAECITGEYPGHAIFKSR+IFSEALHHKEEL+GGQVYYLLPLN  +     +++STPYRMST
Subjt:  MGNCMLKGGG------ERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSL--EPCTLVSTPYRMST

Query:  ADTQPKPP---LPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAG
        A++Q KP     P YNNAGVWKVNLVICPQQLSQILS HNRTQELI+NVRTVAKCGNALESA+NSDHSSVAG
Subjt:  ADTQPKPP---LPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAG

XP_022962561.1 uncharacterized protein LOC111462928 [Cucurbita moschata]1.4e-5564.48Show/hide
Query:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNP-------SLEPCTLVSTPYRMSTA
        MGNC+LK  GER +MVKVVT++GGIMELY PITAECITGEYPGHAIFKSR+IFSE L HK+EL  GQVYYLLPLNP         +  ++VSTPYRMST 
Subjt:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNP-------SLEPCTLVSTPYRMSTA

Query:  DTQ-----------PKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEG
        ++Q                P Y++ GVWKV LVICP+QLS+IL   NRT+ELIENVRTVAKCGN + SAA+SDHSSVAG  +G
Subjt:  DTQ-----------PKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEG

TrEMBL top hitse value%identityAlignment
A0A0A0L3K9 Uncharacterized protein5.9e-6576.16Show/hide
Query:  MGNCMLKGGG------ERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSL--EPCTLVSTPYRMST
        MGNCMLKG G      E  ++VKVVT+ GGIMELYTPITAECITGEYPGHAIFK+R+IFS+ALHHKEEL+GGQVYYLLPLN  +     +++STPYRMST
Subjt:  MGNCMLKGGG------ERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSL--EPCTLVSTPYRMST

Query:  ADTQPKPP---LPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAG
        A++Q KP     P YNNAGVWKVNLVICPQQLSQILS +NRTQELI+NVRTVAKCGNALESA+NSDHSSVAG
Subjt:  ADTQPKPP---LPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAG

A0A1S4DSH2 uncharacterized protein LOC1079903861.8e-6677.91Show/hide
Query:  MGNCMLKGGG------ERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSL--EPCTLVSTPYRMST
        MGNC+LKG G      E  +MVKVVT+ GGIMELYTPITAECITGEYPGHAIFKSR+IFSEALHHKEEL+GGQVYYLLPLN  +     +++STPYRMST
Subjt:  MGNCMLKGGG------ERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSL--EPCTLVSTPYRMST

Query:  ADTQPKPP---LPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAG
        A++Q KP     P YNNAGVWKVNLVICPQQLSQILS HNRTQELI+NVRTVAKCGNALESA+NSDHSSVAG
Subjt:  ADTQPKPP---LPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAG

A0A5D3DB01 Uncharacterized protein1.8e-6677.91Show/hide
Query:  MGNCMLKGGG------ERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSL--EPCTLVSTPYRMST
        MGNC+LKG G      E  +MVKVVT+ GGIMELYTPITAECITGEYPGHAIFKSR+IFSEALHHKEEL+GGQVYYLLPLN  +     +++STPYRMST
Subjt:  MGNCMLKGGG------ERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSL--EPCTLVSTPYRMST

Query:  ADTQPKPP---LPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAG
        A++Q KP     P YNNAGVWKVNLVICPQQLSQILS HNRTQELI+NVRTVAKCGNALESA+NSDHSSVAG
Subjt:  ADTQPKPP---LPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAG

A0A6J1HDL7 uncharacterized protein LOC1114629286.5e-5664.48Show/hide
Query:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNP-------SLEPCTLVSTPYRMSTA
        MGNC+LK  GER +MVKVVT++GGIMELY PITAECITGEYPGHAIFKSR+IFSE L HK+EL  GQVYYLLPLNP         +  ++VSTPYRMST 
Subjt:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNP-------SLEPCTLVSTPYRMSTA

Query:  DTQ-----------PKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEG
        ++Q                P Y++ GVWKV LVICP+QLS+IL   NRT+ELIENVRTVAKCGN + SAA+SDHSSVAG  +G
Subjt:  DTQ-----------PKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEG

A0A6J1IAU7 uncharacterized protein LOC1114728893.2e-5563.93Show/hide
Query:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNP-------SLEPCTLVSTPYRMSTA
        MGNC+LK  GER ++VKVVT++GGIMELY PITAECITGEYPGHAIFKSR+IFSE L HK+EL  GQVYYLLPLNP         +  ++VSTPYRMST 
Subjt:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNP-------SLEPCTLVSTPYRMSTA

Query:  DTQ-----------PKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEG
        ++Q                P Y++ GVWKV LVICP+QLS+IL   NRT+ELIENVRTVAKCGN + SAA+SDHSSVAG  +G
Subjt:  DTQ-----------PKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64700.1 unknown protein5.7e-2033.16Show/hide
Query:  MGNCMLKGGGERQE--MVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSLEPCTLVS-------------
        MGNC+  G G+ +E  ++KV+  +GG++E Y+P+TA  ++  + GHA+F +  +  + L H   L  GQ YYL P   S E  T V              
Subjt:  MGNCMLKGGGERQE--MVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSLEPCTLVS-------------

Query:  -TPYRMS-----------------------TADTQPKPPLPNYNNAG-VWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDH
         TPYRMS                       T   + K      ++ G +WKVNL+I  ++L QILS   RT ELIE+VR VAK   +  ++++S++
Subjt:  -TPYRMS-----------------------TADTQPKPPLPNYNNAG-VWKVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDH

AT1G66480.1 plastid movement impaired 22.6e-0430.68Show/hide
Query:  RQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRT-----IFSEALHHKEELQGGQVYYLLPLNPSLEP-CTLVST----PYR
        +++  KV+ ++G    + TP+TA  +T +YPG+ +  S+      + S+ L   + L+  + Y+L+ L P L P  T V T    PYR
Subjt:  RQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRT-----IFSEALHHKEELQGGQVYYLLPLNPSLEP-CTLVST----PYR

AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.9.8e-0428.57Show/hide
Query:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTI-----FSEALHHKEELQGGQVYYLL
        MGN +   GG++    KV+ ++G   +L TP+TAE +  ++PGH +  S ++      ++ L  K+ L+  ++Y+++
Subjt:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTI-----FSEALHHKEELQGGQVYYLL

AT3G61920.1 unknown protein1.3e-3247.03Show/hide
Query:  MGNCMLKG-GGERQ------EMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTI--FSEALHHKEELQGGQVYYLLPLNPS------LEPCTLVS
        MGNC+ KG GG R+       ++KVVT NGG+MEL+ PI AE IT E+PGH I  S ++   S  L H EEL  G +YYLLPL+ S      L+    +S
Subjt:  MGNCMLKG-GGERQ------EMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTI--FSEALHHKEELQGGQVYYLLPLNPS------LEPCTLVS

Query:  TPYRMSTADTQPKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAK-----CGNALESAANSDHSSVAGVDEG
        TPYRMS   T     L      GVWKV LVI P+QL++IL+    T+ L+E+VRTVAK     CG  + S ANSD  SV    +G
Subjt:  TPYRMSTADTQPKPPLPNYNNAGVWKVNLVICPQQLSQILSHHNRTQELIENVRTVAK-----CGNALESAANSDHSSVAGVDEG

AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1)3.0e-0533.33Show/hide
Query:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRT-----IFSEALHHKEELQGGQVYYLLPLNP
        MGN ++     R+  VKV+ ++G I  L TP+TA   T EYPG  +  S T     + ++ L   + L+    Y+L+ L P
Subjt:  MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRT-----IFSEALHHKEELQGGQVYYLLPLNP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATTGCATGTTGAAAGGGGGTGGAGAAAGACAGGAAATGGTGAAAGTAGTGACCCTTAATGGGGGGATAATGGAGTTGTACACGCCAATAACGGCGGAGTGCAT
TACGGGTGAATATCCAGGGCACGCCATATTCAAAAGCCGGACCATATTCTCGGAGGCCCTTCACCACAAGGAGGAGCTTCAGGGCGGACAAGTCTACTATCTCCTCCCCC
TCAACCCCTCCCTGGAGCCATGCACCCTTGTATCCACGCCCTATCGCATGTCCACCGCCGACACCCAACCCAAGCCCCCACTCCCAAACTACAACAACGCCGGTGTCTGG
AAGGTCAACCTCGTGATTTGCCCCCAACAACTCTCCCAAATTTTGTCTCACCACAATCGCACTCAGGAGTTGATTGAGAACGTCAGGACCGTAGCCAAGTGTGGAAACGC
CCTCGAATCTGCTGCCAACTCCGACCATTCCAGCGTCGCAGGGGTGGACGAAGGTATAGGAAAAGGAGTCTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATTGCATGTTGAAAGGGGGTGGAGAAAGACAGGAAATGGTGAAAGTAGTGACCCTTAATGGGGGGATAATGGAGTTGTACACGCCAATAACGGCGGAGTGCAT
TACGGGTGAATATCCAGGGCACGCCATATTCAAAAGCCGGACCATATTCTCGGAGGCCCTTCACCACAAGGAGGAGCTTCAGGGCGGACAAGTCTACTATCTCCTCCCCC
TCAACCCCTCCCTGGAGCCATGCACCCTTGTATCCACGCCCTATCGCATGTCCACCGCCGACACCCAACCCAAGCCCCCACTCCCAAACTACAACAACGCCGGTGTCTGG
AAGGTCAACCTCGTGATTTGCCCCCAACAACTCTCCCAAATTTTGTCTCACCACAATCGCACTCAGGAGTTGATTGAGAACGTCAGGACCGTAGCCAAGTGTGGAAACGC
CCTCGAATCTGCTGCCAACTCCGACCATTCCAGCGTCGCAGGGGTGGACGAAGGTATAGGAAAAGGAGTCTATTAG
Protein sequenceShow/hide protein sequence
MGNCMLKGGGERQEMVKVVTLNGGIMELYTPITAECITGEYPGHAIFKSRTIFSEALHHKEELQGGQVYYLLPLNPSLEPCTLVSTPYRMSTADTQPKPPLPNYNNAGVW
KVNLVICPQQLSQILSHHNRTQELIENVRTVAKCGNALESAANSDHSSVAGVDEGIGKGVY