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Clc05G00390 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G00390
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr05:296805..297609
RNA-Seq ExpressionClc05G00390
SyntenyClc05G00390
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031882.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]7.4e-1167.92Show/hide
Query:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKG
        +L     V+++RERFEALSAPL HL DEVLESTFLNGLDPE++AE++ YEP G
Subjt:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKG

KAA0066460.1 uncharacterized protein E6C27_scaffold21G005610 [Cucumis melo var. makuwa]1.3e-0733.57Show/hide
Query:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPM----------------------C-----QLARAVRPSGPALK
        +++Q S V EYR  F+ L APL  + ++V+E TF+NGL P +RAE+ C  PKG +  M                      C     Q+  + +P+   + 
Subjt:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPM----------------------C-----QLARAVRPSGPALK

Query:  SPAKAIKAAPIRSITLSNPLPYQ-KKEVPFKRLSDAELQA
        +  +     PIR+ITL N    + +KE  F+RL DAE QA
Subjt:  SPAKAIKAAPIRSITLSNPLPYQ-KKEVPFKRLSDAELQA

RVW41094.1 hypothetical protein CK203_069772 [Vitis vinifera]7.7e-0833.33Show/hide
Query:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLAR----------AVRPSGPALKSPAKAIKAA---------
        +RQ   +  YR  FE L+ PL  + +EV+ESTF+NGL PE+RAE+   +P G  + M    R          A  P+GP      K + +A         
Subjt:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLAR----------AVRPSGPALKSPAKAIKAA---------

Query:  --PIRSITLSNPLPYQKKEVPFKRLSDAELQA
            R++ +      Q++E+P KRL+++ELQA
Subjt:  --PIRSITLSNPLPYQKKEVPFKRLSDAELQA

RVW50870.1 Pentatricopeptide repeat-containing protein [Vitis vinifera]1.0e-0734.88Show/hide
Query:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLAR----------AVRPSGP--------ALKSPAKAIKAAP
        +RQ   V+ YR  FE L+ PL  +L+EV+ESTF+NGL PE+RAE+   +  G  + M    R          A  P+GP          +   K  K   
Subjt:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLAR----------AVRPSGP--------ALKSPAKAIKAAP

Query:  IRSITLSNPLPYQKKEVPFKRLSDAELQA
         R++ +      Q++E+P KRL+++ELQA
Subjt:  IRSITLSNPLPYQKKEVPFKRLSDAELQA

TYJ98385.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]4.5e-0837.61Show/hide
Query:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLARAV----RPSGPALKSPAKAIKAAPIRSITLSNPLPYQ
        +++Q S V EYR  F+ L APL  + ++V+E TF+NGL P +RAE+    PKG +  M Q+A+ +    +P    + +  +     P+ +ITL N    +
Subjt:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLARAV----RPSGPALKSPAKAIKAAPIRSITLSNPLPYQ

Query:  -KKEVPFKRLSDAELQA
         +KE  F+RL DAE QA
Subjt:  -KKEVPFKRLSDAELQA

TrEMBL top hitse value%identityAlignment
A0A438E000 Retrotrans_gag domain-containing protein3.7e-0833.33Show/hide
Query:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLAR----------AVRPSGPALKSPAKAIKAA---------
        +RQ   +  YR  FE L+ PL  + +EV+ESTF+NGL PE+RAE+   +P G  + M    R          A  P+GP      K + +A         
Subjt:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLAR----------AVRPSGPALKSPAKAIKAA---------

Query:  --PIRSITLSNPLPYQKKEVPFKRLSDAELQA
            R++ +      Q++E+P KRL+++ELQA
Subjt:  --PIRSITLSNPLPYQKKEVPFKRLSDAELQA

A0A438ET29 Pentatricopeptide repeat-containing protein4.8e-0834.88Show/hide
Query:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLAR----------AVRPSGP--------ALKSPAKAIKAAP
        +RQ   V+ YR  FE L+ PL  +L+EV+ESTF+NGL PE+RAE+   +  G  + M    R          A  P+GP          +   K  K   
Subjt:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLAR----------AVRPSGP--------ALKSPAKAIKAAP

Query:  IRSITLSNPLPYQKKEVPFKRLSDAELQA
         R++ +      Q++E+P KRL+++ELQA
Subjt:  IRSITLSNPLPYQKKEVPFKRLSDAELQA

A0A5A7SLB5 Gypsy/ty3 element polyprotein3.6e-1167.92Show/hide
Query:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKG
        +L     V+++RERFEALSAPL HL DEVLESTFLNGLDPE++AE++ YEP G
Subjt:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKG

A0A5A7VH17 Uncharacterized protein6.3e-0833.57Show/hide
Query:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPM----------------------C-----QLARAVRPSGPALK
        +++Q S V EYR  F+ L APL  + ++V+E TF+NGL P +RAE+ C  PKG +  M                      C     Q+  + +P+   + 
Subjt:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPM----------------------C-----QLARAVRPSGPALK

Query:  SPAKAIKAAPIRSITLSNPLPYQ-KKEVPFKRLSDAELQA
        +  +     PIR+ITL N    + +KE  F+RL DAE QA
Subjt:  SPAKAIKAAPIRSITLSNPLPYQ-KKEVPFKRLSDAELQA

A0A5D3BJ44 Retrotransposon protein, putative, unclassified2.2e-0837.61Show/hide
Query:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLARAV----RPSGPALKSPAKAIKAAPIRSITLSNPLPYQ
        +++Q S V EYR  F+ L APL  + ++V+E TF+NGL P +RAE+    PKG +  M Q+A+ +    +P    + +  +     P+ +ITL N    +
Subjt:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMCQLARAV----RPSGPALKSPAKAIKAAPIRSITLSNPLPYQ

Query:  -KKEVPFKRLSDAELQA
         +KE  F+RL DAE QA
Subjt:  -KKEVPFKRLSDAELQA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAACACGCCCTACCGAAAAGGAAGTTCCTGGGGGGAGAAGGCAAGAGCTCAGGAGCAAGAGTGGAGCGAGAAACAGGGGGTTAAAGAACGAAAACAGAGGAAGGA
GCTGAGAGATATTTTGACATCCATCAACTATTTGATTCATAGAAAATTACGGCAGCTGAGCATGGTGTCAGAGTACAGAGAGCGCTTCGAGGCTCTTTCGGCACCCTTAC
CTCACCTTCTGGATGAAGTCTTGGAAAGCACGTTTCTTAACGGGTTGGACCCTGAGGTCAGAGCTGAAATCATCTGTTATGAGCCCAAGGGGGAATCAAACCCTATGTGT
CAATTGGCCAGGGCCGTACGCCCTAGTGGGCCTGCCTTGAAAAGCCCAGCGAAGGCGATTAAGGCAGCTCCTATACGTTCAATCACGTTGTCAAACCCACTGCCATACCA
GAAGAAAGAAGTTCCTTTTAAACGACTATCAGATGCTGAGTTGCAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAACACGCCCTACCGAAAAGGAAGTTCCTGGGGGGAGAAGGCAAGAGCTCAGGAGCAAGAGTGGAGCGAGAAACAGGGGGTTAAAGAACGAAAACAGAGGAAGGA
GCTGAGAGATATTTTGACATCCATCAACTATTTGATTCATAGAAAATTACGGCAGCTGAGCATGGTGTCAGAGTACAGAGAGCGCTTCGAGGCTCTTTCGGCACCCTTAC
CTCACCTTCTGGATGAAGTCTTGGAAAGCACGTTTCTTAACGGGTTGGACCCTGAGGTCAGAGCTGAAATCATCTGTTATGAGCCCAAGGGGGAATCAAACCCTATGTGT
CAATTGGCCAGGGCCGTACGCCCTAGTGGGCCTGCCTTGAAAAGCCCAGCGAAGGCGATTAAGGCAGCTCCTATACGTTCAATCACGTTGTCAAACCCACTGCCATACCA
GAAGAAAGAAGTTCCTTTTAAACGACTATCAGATGCTGAGTTGCAAGCTTGA
Protein sequenceShow/hide protein sequence
MRNTPYRKGSSWGEKARAQEQEWSEKQGVKERKQRKELRDILTSINYLIHRKLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRAEIICYEPKGESNPMC
QLARAVRPSGPALKSPAKAIKAAPIRSITLSNPLPYQKKEVPFKRLSDAELQA