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Clc05G00440 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G00440
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationClcChr05:323789..326132
RNA-Seq ExpressionClc05G00440
SyntenyClc05G00440
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038659.1 uncharacterized protein E6C27_scaffold92G001940 [Cucumis melo var. makuwa]8.7e-3659.87Show/hide
Query:  IWQELDLFETYEWKSTDDQKHYQKTVDD--GHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIGKK-ADSVDSSALVTESTAMKA
        IWQ++DLF++Y+WKS +DQKHY+K V+D  GHIYKFLA LNVEFDEVRGRILG + LP++NDVFS+V  E+S +NV+IGKK  D V+SSALVTE TAMK 
Subjt:  IWQELDLFETYEWKSTDDQKHYQKTVDD--GHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIGKK-ADSVDSSALVTESTAMKA

Query:  SDQSN------KTHDKPRVCLLKEQIDQILKLLK-SNSTGNPSVSLAQTGKGTISLS
        S + N       T+        KEQIDQILKLLK ++S+ NP VSLAQ      +LS
Subjt:  SDQSN------KTHDKPRVCLLKEQIDQILKLLK-SNSTGNPSVSLAQTGKGTISLS

RVW50046.1 hypothetical protein CK203_082312 [Vitis vinifera]8.7e-3654.71Show/hide
Query:  MCYTTTKELWDSVTQMI------WQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIGK
        MCY+  KELWD+  QM        Q+LDLF  YEWKSTDD  HY++TV+   IYKFL GLNVEFDEVRG+I+G+  LP ++ VF+EV+REESRR +++GK
Subjt:  MCYTTTKELWDSVTQMI------WQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIGK

Query:  KAD--SVDSSAL-VTESTAMKASDQSNKTHDKPRVC-LLKEQIDQILKLLKSNS-TGNPSVSLAQTGKGT
        K++  SV+S A  V E  A KA+       ++P+VC   KEQ+D +LKLLKSNS +G PSVSLAQ G+ +
Subjt:  KAD--SVDSSAL-VTESTAMKASDQSNKTHDKPRVC-LLKEQIDQILKLLKSNS-TGNPSVSLAQTGKGT

RVX06210.1 hypothetical protein CK203_027429 [Vitis vinifera]1.3e-3653.37Show/hide
Query:  MCYTTTKELWDSVTQM-------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIG
        +CY TTKELW+++ QM       +WQ+ DL+  YEWKS +D  H++KT++D  IYKFLA LNVEFDEVRG+I+G+S LP +++VFSEV REES R V++G
Subjt:  MCYTTTKELWDSVTQM-------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIG

Query:  KKA--DSVDSSALVT-ESTAMKASDQSNKTHDKPRVC-----------LLKEQIDQILKLLKSN-STGNPSVSLAQTG
        KK   +  ++SAL T ++TA KAS+   K  +KPRV              KEQ+D +LKLLKSN S+G PSVSLAQTG
Subjt:  KKA--DSVDSSALVT-ESTAMKASDQSNKTHDKPRVC-----------LLKEQIDQILKLLKSN-STGNPSVSLAQTG

XP_006471430.1 uncharacterized protein LOC102629445 [Citrus sinensis]4.8e-3440.66Show/hide
Query:  MCYTTTKELWDSVTQM------------------------------------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGR
        MCY T KELWD+V+QM                                    +WQ+LDLF TYEWKS DD  H++KTV+D  IYKFLAGLNVEFDEVRGR
Subjt:  MCYTTTKELWDSVTQM------------------------------------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGR

Query:  ILGKSILPNLNDVFSEVRREESRRNVIIGKKA--DSVDSSALVTESTAMKASDQSNKTHDKPRV--------------C---------------------
        I+G+  LP + +VF+EVRREESRR+V++ K++  +S+++SAL+T++ A K ++   ++ DK +               C                     
Subjt:  ILGKSILPNLNDVFSEVRREESRRNVIIGKKA--DSVDSSALVTESTAMKASDQSNKTHDKPRV--------------C---------------------

Query:  -----------LLKEQIDQILKLLKSN-STGNPSVSLAQTG
                     KEQIDQ+LKL+KSN S+G PSVSLA+TG
Subjt:  -----------LLKEQIDQILKLLKSN-STGNPSVSLAQTG

XP_028105813.1 uncharacterized protein LOC114304864 [Camellia sinensis]4.1e-3339.83Show/hide
Query:  MCYTTTKELWDSVTQM------------------------------------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGR
        MCY T +ELWD+V+QM                                    +WQ+LD+F TYEWKS DD  H++KTV+D  IYKFLAGLN+EFDEVRGR
Subjt:  MCYTTTKELWDSVTQM------------------------------------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGR

Query:  ILGKSILPNLNDVFSEVRREESRRNVIIGKKA--DSVDSSALVTESTAMKASDQSNKTHDKPRV--------------C---------------------
        I+G+  LP++ +VF+EVRRE+SR +V++ KK   +S++ S+L++++ A KA++   +  DKPRV              C                     
Subjt:  ILGKSILPNLNDVFSEVRREESRRNVIIGKKA--DSVDSSALVTESTAMKASDQSNKTHDKPRV--------------C---------------------

Query:  -----------LLKEQIDQILKLLKSN-STGNPSVSLAQTG
                     KEQIDQ+LKL+KSN S+G PSV LAQTG
Subjt:  -----------LLKEQIDQILKLLKSN-STGNPSVSLAQTG

TrEMBL top hitse value%identityAlignment
A0A2N9G4V4 Reverse transcriptase Ty1/copia-type domain-containing protein2.4e-3940.15Show/hide
Query:  MCYTTTKELWDSVTQM------------------------------------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGR
        MCY T +ELW++V QM                                    +WQ+LDLF TYEWKS +D +H++K V+D  I+KFLAGLN+EFDEVRGR
Subjt:  MCYTTTKELWDSVTQM------------------------------------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGR

Query:  ILGKSILPNLNDVFSEVRREESRRNVIIGKKAD--SVDSSALV-TESTAMKASDQSNKTHDKPRV-----------------------------------
        ++G+   P++ DVFSEVRREESRRNV++GKK    +V+SSALV  ++ + KA     +T DKPRV                                   
Subjt:  ILGKSILPNLNDVFSEVRREESRRNVIIGKKAD--SVDSSALV-TESTAMKASDQSNKTHDKPRV-----------------------------------

Query:  ------------CLLKEQIDQILKLLKSN-STGNPSVSLAQTGKGTISLSTKLILRSVLRVPQLAWRVI
                       KEQ++ +L LLKSN S+G PSVS+AQTGKG I +S ++ L+SVL VP+LA  ++
Subjt:  ------------CLLKEQIDQILKLLKSN-STGNPSVSLAQTGKGTISLSTKLILRSVLRVPQLAWRVI

A0A2N9IUN8 Uncharacterized protein9.1e-3940.15Show/hide
Query:  MCYTTTKELWDSVTQM------------------------------------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGR
        MCYTT +EL ++V QM                                    +WQ+LDLF TYEWKS +D +H++K V+D  I+KFLAGLN+EFDEVRGR
Subjt:  MCYTTTKELWDSVTQM------------------------------------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGR

Query:  ILGKSILPNLNDVFSEVRREESRRNVIIGKKAD--SVDSSALV-TESTAMKASDQSNKTHDKPRV-----------------------------------
        ++G+  LP++ DVFSEVRREESRRNV++GKK    +V+SSALV  ++ + KA     +T DKPRV                                   
Subjt:  ILGKSILPNLNDVFSEVRREESRRNVIIGKKAD--SVDSSALV-TESTAMKASDQSNKTHDKPRV-----------------------------------

Query:  ------------CLLKEQIDQILKLLKSN-STGNPSVSLAQTGKGTISLSTKLILRSVLRVPQLAWRVI
                       KEQ++ +L LLKSN S+G PSVS+AQTGKG + +S ++ L+SVL VP+LA  ++
Subjt:  ------------CLLKEQIDQILKLLKSN-STGNPSVSLAQTGKGTISLSTKLILRSVLRVPQLAWRVI

A0A438EQM0 Uncharacterized protein4.2e-3654.71Show/hide
Query:  MCYTTTKELWDSVTQMI------WQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIGK
        MCY+  KELWD+  QM        Q+LDLF  YEWKSTDD  HY++TV+   IYKFL GLNVEFDEVRG+I+G+  LP ++ VF+EV+REESRR +++GK
Subjt:  MCYTTTKELWDSVTQMI------WQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIGK

Query:  KAD--SVDSSAL-VTESTAMKASDQSNKTHDKPRVC-LLKEQIDQILKLLKSNS-TGNPSVSLAQTGKGT
        K++  SV+S A  V E  A KA+       ++P+VC   KEQ+D +LKLLKSNS +G PSVSLAQ G+ +
Subjt:  KAD--SVDSSAL-VTESTAMKASDQSNKTHDKPRVC-LLKEQIDQILKLLKSNS-TGNPSVSLAQTGKGT

A0A438JB65 Uncharacterized protein6.5e-3753.37Show/hide
Query:  MCYTTTKELWDSVTQM-------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIG
        +CY TTKELW+++ QM       +WQ+ DL+  YEWKS +D  H++KT++D  IYKFLA LNVEFDEVRG+I+G+S LP +++VFSEV REES R V++G
Subjt:  MCYTTTKELWDSVTQM-------IWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIG

Query:  KKA--DSVDSSALVT-ESTAMKASDQSNKTHDKPRVC-----------LLKEQIDQILKLLKSN-STGNPSVSLAQTG
        KK   +  ++SAL T ++TA KAS+   K  +KPRV              KEQ+D +LKLLKSN S+G PSVSLAQTG
Subjt:  KKA--DSVDSSALVT-ESTAMKASDQSNKTHDKPRVC-----------LLKEQIDQILKLLKSN-STGNPSVSLAQTG

A0A5A7TBD5 Reverse transcriptase Ty1/copia-type domain-containing protein4.2e-3659.87Show/hide
Query:  IWQELDLFETYEWKSTDDQKHYQKTVDD--GHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIGKK-ADSVDSSALVTESTAMKA
        IWQ++DLF++Y+WKS +DQKHY+K V+D  GHIYKFLA LNVEFDEVRGRILG + LP++NDVFS+V  E+S +NV+IGKK  D V+SSALVTE TAMK 
Subjt:  IWQELDLFETYEWKSTDDQKHYQKTVDD--GHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIGKK-ADSVDSSALVTESTAMKA

Query:  SDQSN------KTHDKPRVCLLKEQIDQILKLLK-SNSTGNPSVSLAQTGKGTISLS
        S + N       T+        KEQIDQILKLLK ++S+ NP VSLAQ      +LS
Subjt:  SDQSN------KTHDKPRVCLLKEQIDQILKLLK-SNSTGNPSVSLAQTGKGTISLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTACACTACGACCAAGGAATTATGGGACAGTGTGACCCAAATGATATGGCAAGAACTTGATCTATTTGAGACGTATGAGTGGAAATCCACAGACGACCAAAAACA
TTATCAGAAAACTGTTGATGATGGTCACATTTACAAATTTCTTGCTGGCCTCAATGTTGAGTTTGATGAGGTTAGAGGCAGGATACTTGGGAAAAGTATTCTTCCAAATC
TTAATGATGTTTTTTCTGAAGTTCGCAGGGAAGAAAGCCGCAGGAATGTTATTATTGGGAAAAAGGCTGACTCAGTGGACAGTTCTGCACTAGTGACTGAAAGTACTGCG
ATGAAAGCTTCTGATCAATCCAACAAAACTCATGACAAGCCCCGTGTATGTCTACTCAAAGAGCAAATTGATCAAATCCTAAAGCTGCTAAAATCCAATTCTACGGGTAA
TCCTAGTGTTTCCTTGGCACAAACAGGCAAAGGAACAATTTCCCTAAGTACAAAACTCATACTACGTTCTGTTCTTCGTGTTCCTCAATTAGCTTGGAGAGTCATCATCT
CTACTTTAAGAGAATTTTTGGGACACTTCAGCTCTAGTCCTTTGATCTCAAGCATGGGAAACTCTTCGACAGGGGGAGAAACAATACAAACAGATCTGACAGGTCGAGAT
CCTGAACTCAAGTTTTATACTAGAAGAAACAGAACTCAAAGGGATAGAAATCAGACAGTCGAACTAACACAGCACCAATCTGATACTCCAGTAAATGGTCCTGAAAATTC
GGGTATGTCTCTTAGTCCTTCCTCTCATAATACATTGCCTAATGTCCCTGATCTTGATATTCCAATTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCTACACTACGACCAAGGAATTATGGGACAGTGTGACCCAAATGATATGGCAAGAACTTGATCTATTTGAGACGTATGAGTGGAAATCCACAGACGACCAAAAACA
TTATCAGAAAACTGTTGATGATGGTCACATTTACAAATTTCTTGCTGGCCTCAATGTTGAGTTTGATGAGGTTAGAGGCAGGATACTTGGGAAAAGTATTCTTCCAAATC
TTAATGATGTTTTTTCTGAAGTTCGCAGGGAAGAAAGCCGCAGGAATGTTATTATTGGGAAAAAGGCTGACTCAGTGGACAGTTCTGCACTAGTGACTGAAAGTACTGCG
ATGAAAGCTTCTGATCAATCCAACAAAACTCATGACAAGCCCCGTGTATGTCTACTCAAAGAGCAAATTGATCAAATCCTAAAGCTGCTAAAATCCAATTCTACGGGTAA
TCCTAGTGTTTCCTTGGCACAAACAGGCAAAGGAACAATTTCCCTAAGTACAAAACTCATACTACGTTCTGTTCTTCGTGTTCCTCAATTAGCTTGGAGAGTCATCATCT
CTACTTTAAGAGAATTTTTGGGACACTTCAGCTCTAGTCCTTTGATCTCAAGCATGGGAAACTCTTCGACAGGGGGAGAAACAATACAAACAGATCTGACAGGTCGAGAT
CCTGAACTCAAGTTTTATACTAGAAGAAACAGAACTCAAAGGGATAGAAATCAGACAGTCGAACTAACACAGCACCAATCTGATACTCCAGTAAATGGTCCTGAAAATTC
GGGTATGTCTCTTAGTCCTTCCTCTCATAATACATTGCCTAATGTCCCTGATCTTGATATTCCAATTGCCTAG
Protein sequenceShow/hide protein sequence
MCYTTTKELWDSVTQMIWQELDLFETYEWKSTDDQKHYQKTVDDGHIYKFLAGLNVEFDEVRGRILGKSILPNLNDVFSEVRREESRRNVIIGKKADSVDSSALVTESTA
MKASDQSNKTHDKPRVCLLKEQIDQILKLLKSNSTGNPSVSLAQTGKGTISLSTKLILRSVLRVPQLAWRVIISTLREFLGHFSSSPLISSMGNSSTGGETIQTDLTGRD
PELKFYTRRNRTQRDRNQTVELTQHQSDTPVNGPENSGMSLSPSSHNTLPNVPDLDIPIA