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Clc05G00500 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G00500
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationClcChr05:368722..370551
RNA-Seq ExpressionClc05G00500
SyntenyClc05G00500
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650213.1 hypothetical protein Csa_009973 [Cucumis sativus]1.6e-2695.89Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMV
        MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVMV
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMV

XP_011650635.1 protein transport protein Sec61 subunit beta [Cucumis sativus]2.7e-2695.83Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVM
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

XP_022146520.1 protein transport protein Sec61 subunit beta-like [Momordica charantia]1.2e-2698.61Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        MALGGA PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

XP_022950482.1 protein transport protein Sec61 subunit beta-like [Cucurbita moschata]3.6e-2697.22Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

XP_038875187.1 protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida]6.3e-3198.73Show/hide
Query:  FILHTIRMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        FILHTIRMALGGA PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
Subjt:  FILHTIRMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

TrEMBL top hitse value%identityAlignment
A0A0A0L6Y8 Protein transport protein Sec61 subunit beta1.3e-2695.83Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVM
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

A0A6J1CXG1 Protein transport protein Sec61 subunit beta5.9e-2798.61Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        MALGGA PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

A0A6J1EFZ9 Protein transport protein Sec61 subunit beta5.9e-2798.61Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        MALGGA PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

A0A6J1IH25 Protein transport protein Sec61 subunit beta1.7e-2697.22Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

A0A6J1J088 Protein transport protein Sec61 subunit beta5.9e-2798.61Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        MALGGA PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

SwissProt top hitse value%identityAlignment
A8I6P9 Protein transport protein Sec61 subunit beta1.3e-0747.3Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        +A GG +       A  ++RRR    SG SG   A    + FYTDD PG K+SP VV+ MS+ FIAFV ILHV+
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

P38389 Protein transport protein Sec61 subunit beta1.9e-2279.73Show/hide
Query:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVM
Subjt:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

P60467 Protein transport protein Sec61 subunit beta4.7e-0542.67Show/hide
Query:  GANPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHV
        G +P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VLVMS+ FIA V +LH+
Subjt:  GANPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHV

P60468 Protein transport protein Sec61 subunit beta4.7e-0542.67Show/hide
Query:  GANPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHV
        G +P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VLVMS+ FIA V +LH+
Subjt:  GANPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHV

Q9HFC7 Protein transport protein Sec61 subunit beta9.5e-0645.45Show/hide
Query:  NPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        N QR  A A+   +R  +T S  +GG++ TML+ YTD++ GLK+ P VV+V+S+GFI  V  LH++
Subjt:  NPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein1.4e-2379.73Show/hide
Query:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVM
Subjt:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein1.4e-2379.73Show/hide
Query:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVM
Subjt:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein1.4e-2379.73Show/hide
Query:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVM
Subjt:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein1.4e-2379.73Show/hide
Query:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVM
Subjt:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM

AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein3.9e-2380.28Show/hide
Query:  LGGANPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM
        +GG  PQRGSAAATASMRRR+    S ++GG AGTMLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVM
Subjt:  LGGANPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCCGGTCGGTTCTTAATACGAGAAAACCGAAAACAAAATATCCTAGAAGGAGAAAACCAATGGAATAAGACACGTGGTAGATCTAGATCTCCATTCCGATTCAT
TCTTCATACAATTAGAATGGCACTAGGTGGAGCAAATCCTCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGTAGGAGAAGGACAACAAGTTCTGGTACATCTGGAG
GGGCAGCTGGAACAATGCTGCAGTTCTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATTGCTTTTGTTGCCATT
CTCCATGTTATGGTGAACTGTGATTTACTTAGCCGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCCGGTCGGTTCTTAATACGAGAAAACCGAAAACAAAATATCCTAGAAGGAGAAAACCAATGGAATAAGACACGTGGTAGATCTAGATCTCCATTCCGATTCAT
TCTTCATACAATTAGAATGGCACTAGGTGGAGCAAATCCTCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGTAGGAGAAGGACAACAAGTTCTGGTACATCTGGAG
GGGCAGCTGGAACAATGCTGCAGTTCTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATTGCTTTTGTTGCCATT
CTCCATGTTATGGTGAACTGTGATTTACTTAGCCGATAA
Protein sequenceShow/hide protein sequence
MKAGRFLIRENRKQNILEGENQWNKTRGRSRSPFRFILHTIRMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAI
LHVMVNCDLLSR