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Clc05G00530 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G00530
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLate cornified envelope protein 1E
Genome locationClcChr05:404436..406335
RNA-Seq ExpressionClc05G00530
SyntenyClc05G00530
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048831.1 uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa]4.6e-3669.91Show/hide
Query:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRP
        MDLN  PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+Q TRRPA+        TTS KD +IT+ RSS  G PSPRP
Subjt:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRP

Query:  APRRYKLLKDVLC
        APRRYKLLKDV+C
Subjt:  APRRYKLLKDVLC

XP_004134287.1 uncharacterized protein LOC101222685 [Cucumis sativus]2.0e-3669.91Show/hide
Query:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK-DQITQRRSSGPGFPSPRP
        MDLN  PPLCCLCGDVGFPAKLFRC +CS RFQHSYCSN+YCG +SGD  +++CDWCRS+Q T RPA  +      TTS K ++IT+RRSS  G PSPRP
Subjt:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK-DQITQRRSSGPGFPSPRP

Query:  APRRYKLLKDVLC
        APRRYKLLKDV+C
Subjt:  APRRYKLLKDVLC

XP_008437789.1 PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]4.6e-3669.91Show/hide
Query:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRP
        MDLN  PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+Q TRRPA+        TTS KD +IT+ RSS  G PSPRP
Subjt:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRP

Query:  APRRYKLLKDVLC
        APRRYKLLKDV+C
Subjt:  APRRYKLLKDVLC

XP_022924678.1 uncharacterized protein LOC111432109 [Cucurbita moschata]4.1e-3768.38Show/hide
Query:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFP
        MDLN   PLCCLCGDVGFPAKLFRC +CS RFQHSYCSNFYCG +S DPI ++CDWCR++  TRRP+   A  N G TS K     DQIT+ +SS  G P
Subjt:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFP

Query:  SPRPAPRRYKLLKDVLC
        SPRPAPRRYKLLKDV+C
Subjt:  SPRPAPRRYKLLKDVLC

XP_023526855.1 uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo]5.4e-3768.38Show/hide
Query:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFP
        MDLN   PLCCLCGDVGFPAKLFRC +CS RFQHSYCSNFYCG +S DPI ++CDWCR++  TRRP    A  N G TS K     DQIT+ +SS  G P
Subjt:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFP

Query:  SPRPAPRRYKLLKDVLC
        SPRPAPRRYKLLKDV+C
Subjt:  SPRPAPRRYKLLKDVLC

TrEMBL top hitse value%identityAlignment
A0A0A0L5P1 Uncharacterized protein9.9e-3769.91Show/hide
Query:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK-DQITQRRSSGPGFPSPRP
        MDLN  PPLCCLCGDVGFPAKLFRC +CS RFQHSYCSN+YCG +SGD  +++CDWCRS+Q T RPA  +      TTS K ++IT+RRSS  G PSPRP
Subjt:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK-DQITQRRSSGPGFPSPRP

Query:  APRRYKLLKDVLC
        APRRYKLLKDV+C
Subjt:  APRRYKLLKDVLC

A0A1S3AVF1 uncharacterized protein LOC1034831222.2e-3669.91Show/hide
Query:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRP
        MDLN  PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+Q TRRPA+        TTS KD +IT+ RSS  G PSPRP
Subjt:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRP

Query:  APRRYKLLKDVLC
        APRRYKLLKDV+C
Subjt:  APRRYKLLKDVLC

A0A5D3DB67 Uncharacterized protein2.2e-3669.91Show/hide
Query:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRP
        MDLN  PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+Q TRRPA+        TTS KD +IT+ RSS  G PSPRP
Subjt:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRP

Query:  APRRYKLLKDVLC
        APRRYKLLKDV+C
Subjt:  APRRYKLLKDVLC

A0A6J1ED69 uncharacterized protein LOC1114321092.0e-3768.38Show/hide
Query:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFP
        MDLN   PLCCLCGDVGFPAKLFRC +CS RFQHSYCSNFYCG +S DPI ++CDWCR++  TRRP+   A  N G TS K     DQIT+ +SS  G P
Subjt:  MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFP

Query:  SPRPAPRRYKLLKDVLC
        SPRPAPRRYKLLKDV+C
Subjt:  SPRPAPRRYKLLKDVLC

A0A6J1IAU2 uncharacterized protein LOC111472884 isoform X23.3e-2455.56Show/hide
Query:  PPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKDQITQRRSSGPGFPSPRPAPRRY
        P PP+CCLCGDVGFPA LFRC  CS RFQHSYCSN+Y   +S + I ++CDWCR ++   R  S        +     Q  + R+SG G PSPR APRRY
Subjt:  PPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKDQITQRRSSGPGFPSPRPAPRRY

Query:  KLLKDVLC
        KLLKDV+C
Subjt:  KLLKDVLC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02070.1 unknown protein2.7e-1839.69Show/hide
Query:  LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ------------QITRRPASTTATNN--------------TGTTSHKD
        +CC+CGDVGF  KLF C  C  RFQHSYCSN+Y   Q  +P  +ICDWCRS               +++P+S+    N                  +  D
Subjt:  LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ------------QITRRPASTTATNN--------------TGTTSHKD

Query:  QITQR-RSSGPGFPSPRPAPRRYKLLKDVLC
        Q+ +     G G  SP+ A RRYKLLKDV+C
Subjt:  QITQR-RSSGPGFPSPRPAPRRYKLLKDVLC

AT3G60520.1 unknown protein9.8e-2143.2Show/hide
Query:  LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK------------DQITQRRSSG-----
        +CC+CGDVGF  KLF C  C  RFQHSYCS++Y   +  DPI +ICDWC+ +  +R  A       +   S++             +I Q  SS      
Subjt:  LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHK------------DQITQRRSSG-----

Query:  ----PGFPSPRPAPRRYKLLKDVLC
             G PSPRPA RRYKLLKDV+C
Subjt:  ----PGFPSPRPAPRRYKLLKDVLC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACTCTTACTG
CAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCGACTAATA
ATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAAGGATGTC
TTGTGCTGA
mRNA sequenceShow/hide mRNA sequence
CCCGCGTGTACGTTATATGTAGGCTCGAAATAATAATAATAATGATAATAATAAAAAAGAAAAAAGGAAAAAGGAAGTCGGCAGAGGAAGACAAGAGGGAAGTGAAGGAG
TTGAGGCTGGCAGAAGAAAAGCAGAGGTCCACACGGCCATGGCCATTAGTATATATATAATATGCAATTCCCCCCCTACCCTAATAATATTTATTTTTATTGTAATTTGT
TCGCCCCATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACT
CTTACTGCAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCG
ACTAATAATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAA
GGATGTCTTGTGCTGAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATATATGATCTTAATCTAATACTGTATGTGTATCTCGCTTTTCCAAATTATATATCAACA
AACTACATGACTCTGTGTATTTTATATAATCAACGCCTTTTCGATTACTTCAACTTCTTCTTTAATGCATTTCATTTGCTCATGAAATAAACCCAAGATATAAAACTCTA
AATACCTTCTGCTCTCAAAATCATGTTTAATGCGTATGTTAAACTATGTACGATTTTACATTAAAATATGTTTTGTAGTTTTCTATGTAACATAAGAAATCGCAACCATA
TGTATATATGTATGTATAAATATTAAATAGAACGCTTTTTTTTTTTTCCACCCGCAAGAATATATATATGTGTGTGTAAATTTGTTATCCTTATGGAAAAAGAATAAAAT
GGTAAGTGGAAATTAGAAAGAAGGCGAGGGAAAAGGCCATGTTGTTGTACACGTGGAAACAGGTGGCTGATTGGCAGAAGTATCAGACTCCTATTCCAAAGACTCAAACT
TGAAATTCGGATTCGATCCGTACAGAGCTTGCACGCCTTCCACGTCATCCATTTCTAAATTTGCCTTCTTTTCCCTTGGCTTCAAGCTTGGGTACATCACCGATTCTCTC
ACCGACCTGTGACCCAGCCCCAACAAATGACCATTCTCGTGCGTCGCCATCGCCCACGTCTCCGCCGCATCCCAATCTCAGGGAAAAAGAATGCGCCAAAACACCCAACG
CGCCATTGAACGCCTGCCCCTCGCTGTGATCGCCTCTGTAAACCCGATTTTAATATCGGCGTACCCATAGTCGTCGGTCTCCTGAAACTCACCGGAATCACGTGGGCCCA
TTTCAATGATGCGTTACGAAATACGGCTCTCACGTCTTTTAAACTCAAGTTGCTTATCAAATTCTCCTTGAAAAATGCGTACGTCAGCACCATCGGCATTCCCCGCGTCC
ACCGTGGCTTTCTGGGAAAAAATACATAACGCGCCGTTGCATGGGGTCTATGTAACGTGTCGGACACGCACCACGTGGAATTTGACGGGAAAATCACCGCGGCGGTGGGG
GTTTGGCGTTGTAACTATACTTTTTTCTTTCTTTCTTGATCATTGCTTCTGTATTTGACTTTTTTCCCCTCGCCTCTTTGCGCCAACATGACACAAATTTTTAAAGTTTT
ATGGACAAATTACAAGAAATCAATCGGAAAGTATGACTGTAGTTCTAATTACTATCA
Protein sequenceShow/hide protein sequence
MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKDQITQRRSSGPGFPSPRPAPRRYKLLKDV
LC