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Clc05G00540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G00540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionmetalloendoproteinase 4-MMP
Genome locationClcChr05:404821..408287
RNA-Seq ExpressionClc05G00540
SyntenyClc05G00540
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650215.1 hypothetical protein Csa_010775 [Cucumis sativus]1.5e-1756.99Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG
        P KPRWTR MPMVLTYAFFK+N +SNLSL+DVRAVFR A  KWAHVIPVSF      G   +K G  R     G      +G     F PEIG
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG

XP_008437790.1 PREDICTED: metalloendoproteinase 4-MMP [Cucumis melo]8.9e-1858.06Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG
        P KPRW R MPMVLTYAFFKEN +SNLSLKDVRAVFR A  KWAHVIPVSF      G   +K G  R     G      +G     F PEIG
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG

XP_011650638.1 metalloendoproteinase 4-MMP [Cucumis sativus]1.5e-1756.99Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG
        P KPRWTR MPMVLTYAFFK+N +SNLSL+DVRAVFR A  KWAHVIPVSF      G   +K G  R     G      +G     F PEIG
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG

XP_022944853.1 metalloendoproteinase 4-MMP-like [Cucurbita moschata]1.3e-1655.91Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQ-RGAGVQWRVGCFGAFFFPEIG
        P KPRWTR MPMVLTYAFFKEN +SNLSLKDV+ VFR A  KWAHVIPV F      G   +K G  R     G      +G     F PEIG
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQ-RGAGVQWRVGCFGAFFFPEIG

XP_038903989.1 metalloendoproteinase 4-MMP-like [Benincasa hispida]1.2e-1758.06Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG
        P KPRWTR MPMVLTYAFF+EN ISNLSLKDVRAVFR A  KWAHVIPV F      G   +K G  R     G      +G     F PEIG
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG

TrEMBL top hitse value%identityAlignment
A0A0A0L2Y8 ZnMc domain-containing protein7.4e-1856.99Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG
        P KPRWTR MPMVLTYAFFK+N +SNLSL+DVRAVFR A  KWAHVIPVSF      G   +K G  R     G      +G     F PEIG
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG

A0A1S3AUH8 metalloendoproteinase 4-MMP4.3e-1858.06Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG
        P KPRW R MPMVLTYAFFKEN +SNLSLKDVRAVFR A  KWAHVIPVSF      G   +K G  R     G      +G     F PEIG
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG

A0A5D3DB58 Metalloendoproteinase 4-MMP4.3e-1858.06Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG
        P KPRW R MPMVLTYAFFKEN +SNLSLKDVRAVFR A  KWAHVIPVSF      G   +K G  R     G      +G     F PEIG
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQR-GAGVQWRVGCFGAFFFPEIG

A0A6J1FZ72 metalloendoproteinase 4-MMP-like6.2e-1755.91Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQ-RGAGVQWRVGCFGAFFFPEIG
        P KPRWTR MPMVLTYAFFKEN +SNLSLKDV+ VFR A  KWAHVIPV F      G   +K G  R     G      +G     F PEIG
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQ-RGAGVQWRVGCFGAFFFPEIG

A0A6J1IFQ0 metalloendoproteinase 4-MMP-like2.4e-1655.91Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQ-RGAGVQWRVGCFGAFFFPEIG
        P KPRWTR MPMVLTYAF KEN ISNLSLKDV+ VFR A  KWAHVIPV F      G   +K G  R     G      +G     F PEIG
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQ-RGAGVQWRVGCFGAFFFPEIG

SwissProt top hitse value%identityAlignment
Q8GWW6 Metalloendoproteinase 4-MMP3.2e-1060.78Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSF
        P +PRWTR +P+ LTYAF +ENL   L+  D+R VFR A  KWA VIPVSF
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSF

Arabidopsis top hitse value%identityAlignment
AT2G45040.1 Matrixin family protein2.3e-1160.78Show/hide
Query:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSF
        P +PRWTR +P+ LTYAF +ENL   L+  D+R VFR A  KWA VIPVSF
Subjt:  PEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCAGCCGAGGAGCAGACAGCCCAGGTTAATGTAATGGGCCGAATAAAGCGCCTCAATATCATTTTGCATCTTTCCTATAATGCCCCTATCCGATGTCCAGAAAA
GCCACGGTGGACGCGGGGAATGCCGATGGTGCTGACGTACGCATTTTTCAAGGAGAATTTGATAAGCAACTTGAGTTTAAAAGACGTGAGAGCCGTATTTCGTAACGCAT
CATTGAAATGGGCCCACGTGATTCCGGTGAGTTTCAGGAGACCGACGACTATGGGTACGCCGATATTAAAATCGGGTTTACAGAGGCGATCACAGCGAGGGGCAGGCGTT
CAATGGCGCGTTGGGTGTTTTGGCGCATTCTTTTTCCCTGAGATTGGGATGCGGCGGAGACGTGGGCGATGGCGACGCACGAGAATGGTCATTTGTTGGGGCTGGGTCAC
AGCACAAGACATCCTTGAGGAGCTTGTAGCGGCGTGGAGCAGGGCGAGGGGAGGGGAATCCGGGGCCGGAGCTTCTTCTTTGCGTGATCTGATCCTTGTGGGAGGTAGTA
CCGGTATTATTAGTCGCAGTTGTAGAGGCAGGGCGGCGGGTTATCTGTTGGCTTCGACACCAATCGCATATTTGAAGTATGGGATCCCCCGATTGATCCCCACAGTAGAA
GTTGCTGCAGTAACTGAAGTAATTACAAAATGTAAGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACTCAGCCGAGGAGCAGACAGCCCAGGTTAATGTAATGGGCCGAATAAAGCGCCTCAATATCATTTTGCATCTTTCCTATAATGCCCCTATCCGATGTCCAGAAAA
GCCACGGTGGACGCGGGGAATGCCGATGGTGCTGACGTACGCATTTTTCAAGGAGAATTTGATAAGCAACTTGAGTTTAAAAGACGTGAGAGCCGTATTTCGTAACGCAT
CATTGAAATGGGCCCACGTGATTCCGGTGAGTTTCAGGAGACCGACGACTATGGGTACGCCGATATTAAAATCGGGTTTACAGAGGCGATCACAGCGAGGGGCAGGCGTT
CAATGGCGCGTTGGGTGTTTTGGCGCATTCTTTTTCCCTGAGATTGGGATGCGGCGGAGACGTGGGCGATGGCGACGCACGAGAATGGTCATTTGTTGGGGCTGGGTCAC
AGCACAAGACATCCTTGAGGAGCTTGTAGCGGCGTGGAGCAGGGCGAGGGGAGGGGAATCCGGGGCCGGAGCTTCTTCTTTGCGTGATCTGATCCTTGTGGGAGGTAGTA
CCGGTATTATTAGTCGCAGTTGTAGAGGCAGGGCGGCGGGTTATCTGTTGGCTTCGACACCAATCGCATATTTGAAGTATGGGATCCCCCGATTGATCCCCACAGTAGAA
GTTGCTGCAGTAACTGAAGTAATTACAAAATGTAAGTTTTAA
Protein sequenceShow/hide protein sequence
MDSAEEQTAQVNVMGRIKRLNIILHLSYNAPIRCPEKPRWTRGMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMGTPILKSGLQRRSQRGAGV
QWRVGCFGAFFFPEIGMRRRRGRWRRTRMVICWGWVTAQDILEELVAAWSRARGGESGAGASSLRDLILVGGSTGIISRSCRGRAAGYLLASTPIAYLKYGIPRLIPTVE
VAAVTEVITKCKF