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Clc05G00980 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G00980
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA annealing helicase and endonuclease ZRANB3
Genome locationClcChr05:691279..692699
RNA-Seq ExpressionClc05G00980
SyntenyClc05G00980
Gene Ontology termsNA
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022134708.1 DNA annealing helicase and endonuclease ZRANB3 [Momordica charantia]4.6e-1342.54Show/hide
Query:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED
        MDLDLKSDSQ+MIIFA H KVLDG                                                                       LQAED
Subjt:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED

Query:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL
        RAHRRGQTKAVNIYIFCAKDTLD+S+ QNLNKSL
Subjt:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL

XP_031744588.1 DNA annealing helicase and endonuclease ZRANB3 isoform X2 [Cucumis sativus]2.3e-1242.19Show/hide
Query:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------LQAEDRAHRRG
        MDLDLK+DSQ+MIIFA H KVLDG                                                                 LQAEDR+HRRG
Subjt:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------LQAEDRAHRRG

Query:  QTKAVNIYIFCAKDTLDDSNLQNLNKSL
        QTKAVNIYIFCAKDT D+S+ QNLNKSL
Subjt:  QTKAVNIYIFCAKDTLDDSNLQNLNKSL

XP_034673278.1 DNA annealing helicase and endonuclease ZRANB3 isoform X2 [Vitis riparia]5.0e-1244.95Show/hide
Query:  LDLKSDSQEMIIFAQHQKVLDGLQ----------------------------------AEDRAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSLGQGKW
        LD+K    +MIIFA H KVLDG+Q                                  AEDRAHRRGQT AVNIYIFCAKDT+D+S+ QNLNKSL +   
Subjt:  LDLKSDSQEMIIFAQHQKVLDGLQ----------------------------------AEDRAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSLGQGKW

Query:  VNFPGHGRW
        V++  +G++
Subjt:  VNFPGHGRW

XP_038880755.1 DNA annealing helicase and endonuclease ZRANB3-like isoform X1 [Benincasa hispida]1.0e-1241.79Show/hide
Query:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED
        MDLDLK+DSQ+MIIFA H KVLDG                                                                       LQAED
Subjt:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED

Query:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL
        RAHRRGQTKAVNIYIFCAKDTLD+S+ QNLNKSL
Subjt:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL

XP_038880758.1 DNA annealing helicase and endonuclease ZRANB3-like isoform X2 [Benincasa hispida]1.0e-1241.79Show/hide
Query:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED
        MDLDLK+DSQ+MIIFA H KVLDG                                                                       LQAED
Subjt:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED

Query:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL
        RAHRRGQTKAVNIYIFCAKDTLD+S+ QNLNKSL
Subjt:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL

TrEMBL top hitse value%identityAlignment
A0A0A0LPG8 Uncharacterized protein5.4e-1240.3Show/hide
Query:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED
        MDLDLK+DSQ+MIIFA H KVLDG                                                                       LQAED
Subjt:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED

Query:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL
        R+HRRGQTKAVNIYIFCAKDT D+S+ QNLNKSL
Subjt:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL

A0A1S3BV63 DNA annealing helicase and endonuclease ZRANB3 isoform X14.2e-1240.3Show/hide
Query:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED
        +DLDLK+DSQ+MIIFA H KVLDG                                                                       LQAED
Subjt:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED

Query:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL
        R+HRRGQTKAVNIYIFCAKDTLD+S  QNLNKSL
Subjt:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL

A0A1S3BVS1 DNA annealing helicase and endonuclease ZRANB3 isoform X24.2e-1240.3Show/hide
Query:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED
        +DLDLK+DSQ+MIIFA H KVLDG                                                                       LQAED
Subjt:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED

Query:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL
        R+HRRGQTKAVNIYIFCAKDTLD+S  QNLNKSL
Subjt:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL

A0A5A7UQ33 DNA annealing helicase and endonuclease ZRANB3 isoform X14.2e-1240.3Show/hide
Query:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED
        +DLDLK+DSQ+MIIFA H KVLDG                                                                       LQAED
Subjt:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED

Query:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL
        R+HRRGQTKAVNIYIFCAKDTLD+S  QNLNKSL
Subjt:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL

A0A6J1C2S2 DNA annealing helicase and endonuclease ZRANB32.2e-1342.54Show/hide
Query:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED
        MDLDLKSDSQ+MIIFA H KVLDG                                                                       LQAED
Subjt:  MDLDLKSDSQEMIIFAQHQKVLDG-----------------------------------------------------------------------LQAED

Query:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL
        RAHRRGQTKAVNIYIFCAKDTLD+S+ QNLNKSL
Subjt:  RAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48310.1 chromatin remodeling factor188.3e-0550Show/hide
Query:  DGLQAEDRAHRRGQTKAVNIYIFCAKDTLDD-------SNLQNLNKSL
        D +QAEDRAHR GQ  +VNI+   A DT+DD       S L NL + L
Subjt:  DGLQAEDRAHRRGQTKAVNIYIFCAKDTLDD-------SNLQNLNKSL

AT5G07810.1 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein9.8e-1484.62Show/hide
Query:  LQAEDRAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL
        LQAEDRAHRRGQT AVN+YIFCAKDT+D+SN QNLNK L
Subjt:  LQAEDRAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTGGATTTGAAGAGTGATTCCCAAGAGATGATCATTTTTGCTCAACATCAGAAAGTTCTTGATGGATTACAAGCTGAGGATAGAGCTCACAGGCGAGGGCAGAC
CAAGGCAGTCAACATATACATTTTCTGTGCTAAGGATACGCTAGATGATTCTAATTTGCAAAACTTGAACAAGAGTTTGGGCCAAGGCAAATGGGTTAATTTTCCCGGTC
ATGGTAGATGGTTGATGTTCCTGCTACTTGCCATTGTTCCACAATTTGAGGTAGGCTCAAGTGCGAATGGATCCCCTCAACCACTTGTTCACTATTATCATTCTCATCTT
TTGGGTAGTTGGACAAGCGGGCTGAGCACACTGACCACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACTTGGATTTGAAGAGTGATTCCCAAGAGATGATCATTTTTGCTCAACATCAGAAAGTTCTTGATGGATTACAAGCTGAGGATAGAGCTCACAGGCGAGGGCAGAC
CAAGGCAGTCAACATATACATTTTCTGTGCTAAGGATACGCTAGATGATTCTAATTTGCAAAACTTGAACAAGAGTTTGGGCCAAGGCAAATGGGTTAATTTTCCCGGTC
ATGGTAGATGGTTGATGTTCCTGCTACTTGCCATTGTTCCACAATTTGAGGTAGGCTCAAGTGCGAATGGATCCCCTCAACCACTTGTTCACTATTATCATTCTCATCTT
TTGGGTAGTTGGACAAGCGGGCTGAGCACACTGACCACATAG
Protein sequenceShow/hide protein sequence
MDLDLKSDSQEMIIFAQHQKVLDGLQAEDRAHRRGQTKAVNIYIFCAKDTLDDSNLQNLNKSLGQGKWVNFPGHGRWLMFLLLAIVPQFEVGSSANGSPQPLVHYYHSHL
LGSWTSGLSTLTT