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Clc05G00990 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G00990
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationClcChr05:693427..696480
RNA-Seq ExpressionClc05G00990
SyntenyClc05G00990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEV42261.1 hypothetical protein [Beta vulgaris]9.8e-0831.87Show/hide
Query:  RSDISFGLLDCLAYPVSPSSTAGLGGDLN-------CGPLPSFGRC-----LLELPLDVKIHDVFHIAALPQLVA--------PWFLTPSFSAPLKPMAL
        R ++ FG+ D +   + P     L   LN        GP P   R       L+LP   KIH VFHI+ L + V         P  LT     P  P  +
Subjt:  RSDISFGLLDCLAYPVSPSSTAGLGGDLN-------CGPLPSFGRC-----LLELPLDVKIHDVFHIAALPQLVA--------PWFLTPSFSAPLKPMAL

Query:  LG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVACWGVGNDRPS
        LG                 W  +  ++ATWE+ Q + E+FP FHLEDKV  W  G  RP+
Subjt:  LG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVACWGVGNDRPS

EXC06937.1 hypothetical protein L484_007617 [Morus notabilis]1.3e-0738.78Show/hide
Query:  LPLDVKIHDVFHIAALPQLVAPWFLTPSFSAPLKPMALLGWWEGVGLEDATWESRQILTEQFPEFHLEDKVACWGVGNDRPSIKKNFSKGIRLDELNV
        LP +  IH VFHI+ L + V                 +L  WE +   DATWES + +  QFP F+LEDKV  WG GND+P ++  + +  R+ E NV
Subjt:  LPLDVKIHDVFHIAALPQLVAPWFLTPSFSAPLKPMALLGWWEGVGLEDATWESRQILTEQFPEFHLEDKVACWGVGNDRPSIKKNFSKGIRLDELNV

KAA0039528.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-0939.13Show/hide
Query:  LELPLDVKIHDVFHIAAL--------PQLVAPWFLTPSFSAPLKPMALLG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVACW
        L LP +  IH VFH++ L        P    P  L    S  L  + +LG                W EG   E ATWE   ++ EQFPEFHL+DKV  W
Subjt:  LELPLDVKIHDVFHIAAL--------PQLVAPWFLTPSFSAPLKPMALLG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVACW

Query:  GVGNDRPSIKKNFSK
        GVG+DRP I K +S+
Subjt:  GVGNDRPSIKKNFSK

TXG60193.1 hypothetical protein EZV62_014766 [Acer yangbiense]4.4e-0838.79Show/hide
Query:  LELPLDVKIHDVFHIAALPQLV-----APWFLTPSFSAPLK----PMALLG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVAC
        LELP    IH VFH++ L Q +     AP  L P  SA L+    P +LLG                 W+ +   +ATWE    +  QFPEFHLEDKV  
Subjt:  LELPLDVKIHDVFHIAALPQLV-----APWFLTPSFSAPLK----PMALLG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVAC

Query:  WGVGNDRPSIKKNFSK
        W  GN RP I+  +S+
Subjt:  WGVGNDRPSIKKNFSK

TYJ99691.1 hypothetical protein E5676_scaffold562G00860 [Cucumis melo var. makuwa]2.9e-0738.89Show/hide
Query:  LELPLDVKIHDVFHIAAL---------PQLVAPWFLTPSFSAPLKPMALLG-----------W---WEGVGLEDATWESRQILTEQFPEFHLEDKVACWG
        L+LPL+  IH+VFH++ L          QL+AP  LT  F   L P  +LG           W   W+ +   +ATWES  ++ +QFP+FHLEDKV    
Subjt:  LELPLDVKIHDVFHIAAL---------PQLVAPWFLTPSFSAPLKPMALLG-----------W---WEGVGLEDATWESRQILTEQFPEFHLEDKVACWG

Query:  VGNDRPSI
         G  RP I
Subjt:  VGNDRPSI

TrEMBL top hitse value%identityAlignment
A0A0V0H6H4 Putative ovule protein (Fragment)9.6e-0934.82Show/hide
Query:  LELPLDVKIHDVFHIAALPQLVAPW--------FLTPSFSAPLKPMA-------------LLGWWEGVGLEDATWESRQILTEQFPEFHLEDKVACWGVG
        LELP+  +IH VFH++ L + + P         FLT      ++P A             +L  W+ +   + TWE   I+ +QFP+FHLEDKV   G G
Subjt:  LELPLDVKIHDVFHIAALPQLVAPW--------FLTPSFSAPLKPMA-------------LLGWWEGVGLEDATWESRQILTEQFPEFHLEDKVACWGVG

Query:  NDRPSIKKNFSK
        ND P + K +S+
Subjt:  NDRPSIKKNFSK

A0A5C7HSW3 Chromo domain-containing protein2.1e-0838.79Show/hide
Query:  LELPLDVKIHDVFHIAALPQLV-----APWFLTPSFSAPLK----PMALLG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVAC
        LELP    IH VFH++ L Q +     AP  L P  SA L+    P +LLG                 W+ +   +ATWE    +  QFPEFHLEDKV  
Subjt:  LELPLDVKIHDVFHIAALPQLV-----APWFLTPSFSAPLK----PMALLG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVAC

Query:  WGVGNDRPSIKKNFSK
        W  GN RP I+  +S+
Subjt:  WGVGNDRPSIKKNFSK

A0A5D3CTU6 Ty3-gypsy retrotransposon protein1.1e-0939.13Show/hide
Query:  LELPLDVKIHDVFHIAAL--------PQLVAPWFLTPSFSAPLKPMALLG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVACW
        L LP +  IH VFH++ L        P    P  L    S  L  + +LG                W EG   E ATWE   ++ EQFPEFHL+DKV  W
Subjt:  LELPLDVKIHDVFHIAAL--------PQLVAPWFLTPSFSAPLKPMALLG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVACW

Query:  GVGNDRPSIKKNFSK
        GVG+DRP I K +S+
Subjt:  GVGNDRPSIKKNFSK

G9FIF5 Uncharacterized protein4.8e-0831.87Show/hide
Query:  RSDISFGLLDCLAYPVSPSSTAGLGGDLN-------CGPLPSFGRC-----LLELPLDVKIHDVFHIAALPQLVA--------PWFLTPSFSAPLKPMAL
        R ++ FG+ D +   + P     L   LN        GP P   R       L+LP   KIH VFHI+ L + V         P  LT     P  P  +
Subjt:  RSDISFGLLDCLAYPVSPSSTAGLGGDLN-------CGPLPSFGRC-----LLELPLDVKIHDVFHIAALPQLVA--------PWFLTPSFSAPLKPMAL

Query:  LG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVACWGVGNDRPS
        LG                 W  +  ++ATWE+ Q + E+FP FHLEDKV  W  G  RP+
Subjt:  LG----------------WWEGVGLEDATWESRQILTEQFPEFHLEDKVACWGVGNDRPS

W9RSR4 Chromo domain-containing protein6.2e-0838.78Show/hide
Query:  LPLDVKIHDVFHIAALPQLVAPWFLTPSFSAPLKPMALLGWWEGVGLEDATWESRQILTEQFPEFHLEDKVACWGVGNDRPSIKKNFSKGIRLDELNV
        LP +  IH VFHI+ L + V                 +L  WE +   DATWES + +  QFP F+LEDKV  WG GND+P ++  + +  R+ E NV
Subjt:  LPLDVKIHDVFHIAALPQLVAPWFLTPSFSAPLKPMALLGWWEGVGLEDATWESRQILTEQFPEFHLEDKVACWGVGNDRPSIKKNFSKGIRLDELNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGCAGATTTTATTGATGAAGAAGGATTCTTTCGTTCGTCTGTGTTTGCTCTGCGCTGCTGTCCGTCTCCATTCTTCTCCATCGGCTTCTCTTGCTCTATGGATAT
CACTGAAGAGCAGCGAAAGCGAGCCGAAGCAAACCGTTTAGCTGCCGCATCCAAACGCAAAGCACTGGTTGAAGCTTTTCAAATGTCACTCGTTCTCGTTCACTGTCTTT
GTTTTGCGCGTCTCGACGATAAGAAATCAGTGGAAAAACTCGATACCTTTTGGATTTTTAGCCTTACTTTTTATTCCCTCTGCATTTGTCTAGCTCGCTCGGATATTTCT
TTTGGTTTACTTGATTGCCTGGCTTATCCGGTTTCACCCAGTTCCACTGCGGGTCTTGGGGGAGATCTGAATTGTGGTCCACTTCCTTCCTTTGGGCGTTGCCTACTTGA
GCTGCCACTTGACGTTAAGATACATGATGTCTTTCATATTGCGGCATTGCCCCAGCTGGTAGCCCCCTGGTTTTTGACCCCTTCCTTCTCTGCTCCTTTGAAACCAATGG
CACTGTTGGGTTGGTGGGAAGGTGTTGGACTGGAAGATGCCACTTGGGAGTCCAGACAAATTCTGACTGAGCAATTTCCTGAGTTCCACCTTGAAGACAAAGTGGCTTGT
TGGGGGGTGGGTAATGATAGACCCTCGATCAAGAAGAACTTCTCAAAAGGCATTCGATTAGATGAGTTGAATGTGCTGCTCAAGCAAACTGTTATGGTGTGCGTTCATTC
TCTCTATTACTTATGTTTGAGTAGACTGGACAATGCTGTTGTTGAAAAGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGCAGATTTTATTGATGAAGAAGGATTCTTTCGTTCGTCTGTGTTTGCTCTGCGCTGCTGTCCGTCTCCATTCTTCTCCATCGGCTTCTCTTGCTCTATGGATAT
CACTGAAGAGCAGCGAAAGCGAGCCGAAGCAAACCGTTTAGCTGCCGCATCCAAACGCAAAGCACTGGTTGAAGCTTTTCAAATGTCACTCGTTCTCGTTCACTGTCTTT
GTTTTGCGCGTCTCGACGATAAGAAATCAGTGGAAAAACTCGATACCTTTTGGATTTTTAGCCTTACTTTTTATTCCCTCTGCATTTGTCTAGCTCGCTCGGATATTTCT
TTTGGTTTACTTGATTGCCTGGCTTATCCGGTTTCACCCAGTTCCACTGCGGGTCTTGGGGGAGATCTGAATTGTGGTCCACTTCCTTCCTTTGGGCGTTGCCTACTTGA
GCTGCCACTTGACGTTAAGATACATGATGTCTTTCATATTGCGGCATTGCCCCAGCTGGTAGCCCCCTGGTTTTTGACCCCTTCCTTCTCTGCTCCTTTGAAACCAATGG
CACTGTTGGGTTGGTGGGAAGGTGTTGGACTGGAAGATGCCACTTGGGAGTCCAGACAAATTCTGACTGAGCAATTTCCTGAGTTCCACCTTGAAGACAAAGTGGCTTGT
TGGGGGGTGGGTAATGATAGACCCTCGATCAAGAAGAACTTCTCAAAAGGCATTCGATTAGATGAGTTGAATGTGCTGCTCAAGCAAACTGTTATGGTGTGCGTTCATTC
TCTCTATTACTTATGTTTGAGTAGACTGGACAATGCTGTTGTTGAAAAGTTCTGA
Protein sequenceShow/hide protein sequence
MVADFIDEEGFFRSSVFALRCCPSPFFSIGFSCSMDITEEQRKRAEANRLAAASKRKALVEAFQMSLVLVHCLCFARLDDKKSVEKLDTFWIFSLTFYSLCICLARSDIS
FGLLDCLAYPVSPSSTAGLGGDLNCGPLPSFGRCLLELPLDVKIHDVFHIAALPQLVAPWFLTPSFSAPLKPMALLGWWEGVGLEDATWESRQILTEQFPEFHLEDKVAC
WGVGNDRPSIKKNFSKGIRLDELNVLLKQTVMVCVHSLYYLCLSRLDNAVVEKF