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Clc05G01000 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G01000
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description(1->3)-beta-glucan endohydrolase
Genome locationClcChr05:699086..699686
RNA-Seq ExpressionClc05G01000
SyntenyClc05G01000
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0046658 - anchored component of plasma membrane (cellular component)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
InterPro domainsIPR017853 - Glycoside hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1825082.1 unnamed protein product [Ananas comosus var. bracteatus]1.5e-0657.45Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL
        Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL

KAB2618319.1 glucan endo-1,3-beta-glucosidase GVI [Pyrus ussuriensis x Pyrus communis]4.5e-0650.79Show/hide
Query:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNV
        M++VY Y        NV   Y  F A +P+VRDG+L YYN FD MVDAF+AAMEK    D+ V
Subjt:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNV

OAY82609.1 Glucan endo-1,3-beta-glucosidase, basic isoform [Ananas comosus]1.5e-0657.45Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL
        Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL

XP_020081623.1 lichenase-like, partial [Ananas comosus]1.5e-0657.45Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL
        Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL

XP_020110419.1 probable glucan endo-1,3-beta-glucosidase BG4 [Ananas comosus]1.5e-0657.45Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL
        Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL

TrEMBL top hitse value%identityAlignment
A0A199W005 Glucan endo-1,3-beta-glucosidase, basic isoform7.5e-0757.45Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL
        Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL

A0A5N5GRV7 (1->3)-beta-glucan endohydrolase2.2e-0650.79Show/hide
Query:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNV
        M++VY Y        NV   Y  F A +P+VRDG+L YYN FD MVDAF+AAMEK    D+ V
Subjt:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNV

A0A6P5EJF7 lichenase-like7.5e-0757.45Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL
        Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL

A0A6P5GR84 probable glucan endo-1,3-beta-glucosidase BG47.5e-0757.45Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL
        Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL

A0A6V7P2M2 Uncharacterized protein7.5e-0757.45Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL
        Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL

SwissProt top hitse value%identityAlignment
A7PQW3 Glucan endo-1,3-beta-glucosidase4.4e-0441.3Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK
        Y+   +N+   Y +F A+  +V+DG+  Y N FD ++DA YAA+EK
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK

P52400 Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment)3.3e-0445.65Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK
        YS     +S  Y +F A N +V+DG+  Y N FD M+D+ YAAME+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK

P52401 Glucan endo-1,3-beta-glucosidase, basic isoform 24.4e-0445.65Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK
        YS     +S  Y +F A N +V+DG+  Y N FD M+D+ YAAME+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK

P52402 Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment)4.4e-0445.65Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK
        YS     +S  Y +F A N +V+DG+  Y N FD M+D+ YAAME+
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK

Q03773 Glucan endo-1,3-beta-glucosidase9.4e-0744.44Show/hide
Query:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNV
        MV+VYSY       K++S  Y +FR+ + +V+DG+L Y N FD  VDA YAA+EK     +N+
Subjt:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNV

Arabidopsis top hitse value%identityAlignment
AT1G33220.1 Glycosyl hydrolase superfamily protein9.0e-0539.34Show/hide
Query:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDM
        +V++Y Y        N+   Y  F     +V+DG L Y N FD + DAF  AMEK  VKD+
Subjt:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDM

AT1G77780.1 Glycosyl hydrolase superfamily protein2.4e-0542.86Show/hide
Query:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL
        MV+VY Y        +VS  Y  FR+ +P+V DG   Y N FD  +DAF  A+EK+
Subjt:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL

AT1G77790.1 Glycosyl hydrolase superfamily protein9.0e-0538.89Show/hide
Query:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNV
        Y+    ++S  Y  F++  P+V DG L Y N F+ MVD F AA+EK+   ++ V
Subjt:  YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNV

AT5G20330.1 beta-1,3-glucanase 41.5e-0437.7Show/hide
Query:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDM
        +V++Y Y        N+   Y  F   + +V+DG+L Y N FD + DAF  AMEK  VK++
Subjt:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDM

AT5G20390.1 Glycosyl hydrolase superfamily protein2.4e-0539.34Show/hide
Query:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDM
        +V++Y Y        N+   Y +F     +V+DG L Y N FD++ DAF  AMEK  VKD+
Subjt:  MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAGCGTGTACTCGTATAAGGAGAAAAATGTGAGTCAAAGCTATGTCATGTTTCGTGCCGCAAACCCGATGGTTCGTGATGGAACATTGGACTACTACAATCGATT
TGATATAATGGTGGATGCATTTTATGCTGCCATGGAAAAGTTAGAGGTGAAAGACATGAATGTGGGAAAACTGGGTGGCCTAATCGTAATTACAAGGCAGCAACGAGCGT
TGCAGCGGAGTCAGCCGCCACTTGGAGTTGACAGTCAGCCGACGAATGAAGTCGCAGTAAGTCGTCCGTTTGAAGTCGTCGTTCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAAGCGTGTACTCGTATAAGGAGAAAAATGTGAGTCAAAGCTATGTCATGTTTCGTGCCGCAAACCCGATGGTTCGTGATGGAACATTGGACTACTACAATCGATT
TGATATAATGGTGGATGCATTTTATGCTGCCATGGAAAAGTTAGAGGTGAAAGACATGAATGTGGGAAAACTGGGTGGCCTAATCGTAATTACAAGGCAGCAACGAGCGT
TGCAGCGGAGTCAGCCGCCACTTGGAGTTGACAGTCAGCCGACGAATGAAGTCGCAGTAAGTCGTCCGTTTGAAGTCGTCGTTCGATAG
Protein sequenceShow/hide protein sequence
MVSVYSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNVGKLGGLIVITRQQRALQRSQPPLGVDSQPTNEVAVSRPFEVVVR