CuGenDBv2

Gene ID	Clc05G01360
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	cyclic nucleotide-gated ion channel 1
Genome location	ClcChr05:878952..880408
RNA-Seq Expression	Clc05G01360
Synteny	Clc05G01360
Gene Ontology terms	GO:0034220 - ion transmembrane transport (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005216 - ion channel activity (molecular function)
InterPro domains	IPR005821 - Ion transport domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022980030.1 cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucurbita maxima]

6.8e-30

88.1

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAI+ AAK PI LKTKDVVKIAVLLQY+PRLLRIYPLYREVTRT GILTETAWSGAAFNLLIYMQ SHVVGAIWY LSVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

XP_022980035.1 cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucurbita maxima]

6.8e-30

88.1

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAI+ AAK PI LKTKDVVKIAVLLQY+PRLLRIYPLYREVTRT GILTETAWSGAAFNLLIYMQ SHVVGAIWY LSVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

XP_023526877.1 cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucurbita pepo subsp. pepo]

6.8e-30

88.1

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAI+ AAK PI LKTKDVVKIAVLLQY+PRLLRIYPLYREVTRT GILTETAWSGAAFNLLIYMQ SHVVGAIWY LSVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

XP_023526880.1 cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucurbita pepo subsp. pepo]

6.8e-30

88.1

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAI+ AAK PI LKTKDVVKIAVLLQY+PRLLRIYPLYREVTRT GILTETAWSGAAFNLLIYMQ SHVVGAIWY LSVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

XP_038884413.1 cyclic nucleotide-gated ion channel 1-like [Benincasa hispida]

2.0e-29

86.9

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  V AIVTA K PI LKTKDVVKIAV+LQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIY+QAS+VVGAIWY LS+E
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U5I7 Cyclic nucleotide-gated ion channel 1

2.8e-29

85.71

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAI+ A K PI LKTKD VK+AVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYM ASHVVGAIWY LS+E
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

A0A6J1E9H2 cyclic nucleotide-gated ion channel 1-like isoform X2

2.1e-29

84.52

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAI+ AA+ P+ LKTKD+VKIAVLLQY+PRLLRIYPLYREVTRT GILTETAWSGAAFNLLIYMQ SHVVGAIWY LSVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

A0A6J1EF20 cyclic nucleotide-gated ion channel 1-like isoform X1

2.1e-29

84.52

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAI+ AA+ P+ LKTKD+VKIAVLLQY+PRLLRIYPLYREVTRT GILTETAWSGAAFNLLIYMQ SHVVGAIWY LSVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

A0A6J1IV06 cyclic nucleotide-gated ion channel 1-like isoform X1

3.3e-30

88.1

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAI+ AAK PI LKTKDVVKIAVLLQY+PRLLRIYPLYREVTRT GILTETAWSGAAFNLLIYMQ SHVVGAIWY LSVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

A0A6J1IV11 cyclic nucleotide-gated ion channel 1-like isoform X2

3.3e-30

88.1

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAI+ AAK PI LKTKDVVKIAVLLQY+PRLLRIYPLYREVTRT GILTETAWSGAAFNLLIYMQ SHVVGAIWY LSVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

SwissProt top hits

e value

%identity

Alignment

O65717 Cyclic nucleotide-gated ion channel 1

9.2e-22

60.71

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  +L I+   +    L TK+++K  V  QYIPR +RIYPLY+EVTRTSGILTETAW+GAAFNL +YM ASHV GA WY  S+E
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

O82226 Probable cyclic nucleotide-gated ion channel 6

1.2e-16

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  V   +  ++   +L TK  ++  VL+QYIPR LR+YPL  E+ RT+G+  ETAW+GAA+ LL+YM ASH+VGA+WY L++E
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

Q9LD40 Putative cyclic nucleotide-gated ion channel 13

1.4e-22

61.9

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLA++    +P+ L TKD +   +  QYIPR+LRIYPLY EVTRTSGI+TETAW+GAA+NL +YM ASHV GA+WY +SVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

Q9LNJ0 Probable cyclic nucleotide-gated ion channel 10

7.5e-24

60.71

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLA++ +  +P+ L TKD +K +++ QY+PR+LR+YPLY EVTRTSGI+TETAW+GAA+NL +YM ASHV GA+WY +SVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

Q9SKD7 Probable cyclic nucleotide-gated ion channel 3

2.1e-21

57.14

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAIV   +RP  L  K+++K  +  QY+PR+ RIYPL++EVTRTSG++TETAW+GAA NL +YM ASHV G+ WY +S+E
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

Arabidopsis top hits

e value

%identity

Alignment

AT1G01340.1 cyclic nucleotide gated channel 10

5.4e-25

60.71

Show/hide

Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLA++ +  +P+ L TKD +K +++ QY+PR+LR+YPLY EVTRTSGI+TETAW+GAA+NL +YM ASHV GA+WY +SVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

AT1G01340.2 cyclic nucleotide gated channel 10

5.4e-25

60.71

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLA++ +  +P+ L TKD +K +++ QY+PR+LR+YPLY EVTRTSGI+TETAW+GAA+NL +YM ASHV GA+WY +SVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

AT2G46430.1 cyclic nucleotide gated channel 3

1.5e-22

57.14

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLAIV   +RP  L  K+++K  +  QY+PR+ RIYPL++EVTRTSG++TETAW+GAA NL +YM ASHV G+ WY +S+E
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

AT4G01010.1 cyclic nucleotide-gated channel 13

1.0e-23

61.9

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  VLA++    +P+ L TKD +   +  QYIPR+LRIYPLY EVTRTSGI+TETAW+GAA+NL +YM ASHV GA+WY +SVE
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

AT5G53130.1 cyclic nucleotide gated channel 1

6.6e-23

60.71

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Query:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE
        Q  +L I+   +    L TK+++K  V  QYIPR +RIYPLY+EVTRTSGILTETAW+GAAFNL +YM ASHV GA WY  S+E
Subjt:  QTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVE

Sequences

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CDS sequence

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ATGTCTGTAGCGACACAGGGAGTGGGAGAGAGCAAAGGAGTTCTGTGTACAAAATGCCTCTACAACTCCAACGAGGTAGCCAAAATTGGACAGCACCAGAGAAACCAGAC
TTTTGTATTAGCAATCGTAACTGCAGCGAAACGCCCGATTCTACTGAAGACAAAGGACGTCGTGAAGATTGCAGTTCTTTTGCAATATATTCCAAGACTACTCCGAATTT
ATCCACTGTATAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCCTGGAGTGGAGCTGCCTTCAATCTCCTCATTTATATGCAAGCTAGTCATGTAGTCGGT
GCCATTTGGTATTCGTTATCAGTAGAATGA

mRNA sequence

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Protein sequence

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MSVATQGVGESKGVLCTKCLYNSNEVAKIGQHQRNQTFVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVG
AIWYSLSVE

Clc05G01360 (gene) of Watermelon (cordophanus) v2 genome