; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G02160 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G02160
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionC2 domain-containing protein
Genome locationClcChr05:1491359..1494270
RNA-Seq ExpressionClc05G02160
SyntenyClc05G02160
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000008 - C2 domain
IPR002885 - Pentatricopeptide repeat
IPR035892 - C2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048969.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]6.9e-1275.51Show/hide
Query:  MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG
        +RDI  VWKLF QIP KDVV WS +ISACVKNGQY+EAFD+ REMQ+QG
Subjt:  MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG

KAA0048969.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.7e-8287.95Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        SPAYYVMVECGNHE RT+VSSGKHE+ACWNEKFSFELPT+DWKNI+HIKFRI+ETKLL+NE+VGATVIHL GIISEGYERGFIEVRPAPYNVVLEDDDTY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFFTKEEI LME RE +ADGK QRKPICS +MN+WRIVWLKLL LIGH+NSSSERKQQ
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ

XP_016898949.1 PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo]3.7e-8288.55Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        SPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERGFIEVRPAPYNVVLE+D+TY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFF KEEI LMEARE +ADGK QRKPICS+ MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ

XP_016898949.1 PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo]6.9e-1275.51Show/hide
Query:  MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG
        +RDI  VWKLF QIP KDVV WS +ISACVKNGQY+EAFD+ REMQ+QG
Subjt:  MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG

XP_016898949.1 PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo]3.7e-8288.55Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        SPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERGFIEVRPAPYNVVLE+D+TY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFF KEEI LMEARE +ADGK QRKPICS+ MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ

XP_031738550.1 16 kDa phloem protein 2 isoform X2 [Cucumis sativus]3.3e-7884.34Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        SPAYYV VECGNHERRT+VSSGKHE ACWNEKFSFELPTSDW NITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERG IEV PAPYNVVLE+D+TY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFFTKEEI L EARE +ADGK QR+PICS+++NLWRIVWLKL C I HKNSSS +K+Q
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ

XP_038885271.1 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g01580 [Benincasa hispida]1.0e-1895.92Show/hide
Query:  MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG
        MRDIGIVWKLFYQIPYKDVVLWS MISACVKNGQYNEAFD+FREMQNQG
Subjt:  MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG

XP_038885271.1 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g01580 [Benincasa hispida]9.2e-8187.35Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        SPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTS WKNITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERGFIEVRPAPYNVVLE+D+TY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFF KEEI LMEARE +ADGK QR PICS+ MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ

TrEMBL top hitse value%identityAlignment
A0A0A0L8X2 C2 domain-containing protein1.6e-7884.34Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        SPAYYV VECGNHERRT+VSSGKHE ACWNEKFSFELPTSDW NITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERG IEV PAPYNVVLE+D+TY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFFTKEEI L EARE +ADGK QR+PICS+++NLWRIVWLKL C I HKNSSS +K+Q
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ

A0A1S4DSI8 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g565703.4e-1275.51Show/hide
Query:  MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG
        +RDI  VWKLF QIP KDVV WS +ISACVKNGQY+EAFD+ REMQ+QG
Subjt:  MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG

A0A1S4DSI8 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g565704.4e-8187.35Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        SPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTS WKNITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERGFIEVRPAPYNVVLE+D+TY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFF KEEI LMEARE +ADGK QR PICS+ MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ

A0A5A7U647 Putative pentatricopeptide repeat-containing protein1.8e-8288.55Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        SPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERGFIEVRPAPYNVVLE+D+TY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFF KEEI LMEARE +ADGK QRKPICS+ MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ

A0A5A7U647 Putative pentatricopeptide repeat-containing protein3.4e-1275.51Show/hide
Query:  MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG
        +RDI  VWKLF QIP KDVV WS +ISACVKNGQY+EAFD+ REMQ+QG
Subjt:  MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG

A0A5A7U647 Putative pentatricopeptide repeat-containing protein1.8e-8288.55Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        SPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERGFIEVRPAPYNVVLE+D+TY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFF KEEI LMEARE +ADGK QRKPICS+ MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ

A0A6J1ISM2 uncharacterized protein LOC111479016 isoform X25.8e-7381.33Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        S AYYVMVECGN E RT+VSSGKHE  CWNEKFSFELP+SDWKNITHIKFRIME K L+NE+VGA +IHLGGIISEGYERGFIEVRPAPYNVVLE+DDTY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFFTKEEI  MEARE +AD KQ+RK I  +VMNLWR VWLKLLCL GHK  SS +KQQ
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQQ

SwissProt top hitse value%identityAlignment
Q9FJY9 Pentatricopeptide repeat-containing protein At5g66500, mitochondrial2.9e-0536.71Show/hide
Query:  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPSSPAYYVMVECGNHERRTRVSSGKHEFACWNEKF
        +F  IP K VV W+ MI A   NG   +A +IFREM  +G    P+S  + V++    H     V  GK  F    EK+
Subjt:  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPSSPAYYVMVECGNHERRTRVSSGKHEFACWNEKF

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic7.2e-0451.35Show/hide
Query:  KLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREM
        KLF +IP KDVV W+ MIS   + G Y EA ++F++M
Subjt:  KLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREM

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.1e-0551.35Show/hide
Query:  KLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREM
        KLF +IP KDVV W+ MIS   + G Y EA ++F++M
Subjt:  KLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREM

AT1G74630.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.8e-0544.19Show/hide
Query:  KLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGS
        ++F ++P++D V WS MI     NG +NE+F  FRE+Q  G S
Subjt:  KLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGS

AT3G55470.2 Calcium-dependent lipid-binding (CaLB domain) family protein1.4e-0525.45Show/hide
Query:  YVMVECGNHERRTRVSSGKHEFACWNEKFSF--ELPTS--DWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY
        YV ++     R++ V+        WN+K  +  E P S  D+K I  +   +      +++ +G   +H+  ++  G E+G  E+RP  YN+V + D ++
Subjt:  YVMVECGNHERRTRVSSGKHEFACWNEKFSF--ELPTS--DWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTY

Query:  KGEIKVGFKF
         GE+ +G  +
Subjt:  KGEIKVGFKF

AT4G00467.1 Calcium-dependent lipid-binding (CaLB domain) family protein3.0e-3744.85Show/hide
Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNN-ETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDT
        +P YYV+++CG  E R+++S G ++ A WN+KF F+ P S WK +T+IK RI++ +L N+   VG T+IHLGGII+EG +RG+IE++PAPYNVVLE DDT
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNN-ETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDT

Query:  YKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRI-------VWLKLLCLIGHK
        +KGE+KVG +F   +++   +A EL  + K   + + S + NL ++        W +  CLI  K
Subjt:  YKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRI-------VWLKLLCLIGHK

AT5G66500.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.1e-0636.71Show/hide
Query:  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPSSPAYYVMVECGNHERRTRVSSGKHEFACWNEKF
        +F  IP K VV W+ MI A   NG   +A +IFREM  +G    P+S  + V++    H     V  GK  F    EK+
Subjt:  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPSSPAYYVMVECGNHERRTRVSSGKHEFACWNEKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGATATTGGGATCGTCTGGAAGTTGTTTTATCAGATACCTTACAAGGATGTTGTTTTGTGGAGTGTCATGATCTCAGCATGCGTGAAAAATGGTCAGTATAATGA
AGCATTTGATATTTTCAGAGAGATGCAAAATCAGGGAGGTTCAACCAAACCAAGTTCCCCAGCATATTACGTGATGGTAGAATGTGGAAATCATGAACGTAGAACAAGAG
TATCATCAGGTAAACATGAATTTGCTTGTTGGAATGAGAAGTTTTCATTTGAACTCCCTACATCTGATTGGAAGAACATAACTCATATCAAATTCAGAATCATGGAAACA
AAATTGCTGAACAATGAAACCGTCGGAGCTACCGTAATCCACCTTGGTGGAATAATTTCAGAGGGTTATGAAAGAGGATTCATAGAAGTTAGGCCAGCTCCATACAACGT
GGTGCTCGAGGACGACGACACTTACAAGGGAGAAATAAAAGTAGGATTCAAATTCTTCACCAAAGAAGAAATAACACTAATGGAAGCAAGAGAGTTACTTGCAGATGGGA
AGCAGCAAAGAAAACCTATCTGCAGCGAAGTTATGAACTTGTGGAGAATTGTATGGTTAAAGTTATTGTGCCTCATTGGCCACAAGAATTCTTCCAGTGAACGAAAGCAA
CAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGATATTGGGATCGTCTGGAAGTTGTTTTATCAGATACCTTACAAGGATGTTGTTTTGTGGAGTGTCATGATCTCAGCATGCGTGAAAAATGGTCAGTATAATGA
AGCATTTGATATTTTCAGAGAGATGCAAAATCAGGGAGGTTCAACCAAACCAAGTTCCCCAGCATATTACGTGATGGTAGAATGTGGAAATCATGAACGTAGAACAAGAG
TATCATCAGGTAAACATGAATTTGCTTGTTGGAATGAGAAGTTTTCATTTGAACTCCCTACATCTGATTGGAAGAACATAACTCATATCAAATTCAGAATCATGGAAACA
AAATTGCTGAACAATGAAACCGTCGGAGCTACCGTAATCCACCTTGGTGGAATAATTTCAGAGGGTTATGAAAGAGGATTCATAGAAGTTAGGCCAGCTCCATACAACGT
GGTGCTCGAGGACGACGACACTTACAAGGGAGAAATAAAAGTAGGATTCAAATTCTTCACCAAAGAAGAAATAACACTAATGGAAGCAAGAGAGTTACTTGCAGATGGGA
AGCAGCAAAGAAAACCTATCTGCAGCGAAGTTATGAACTTGTGGAGAATTGTATGGTTAAAGTTATTGTGCCTCATTGGCCACAAGAATTCTTCCAGTGAACGAAAGCAA
CAGTAA
Protein sequenceShow/hide protein sequence
MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPSSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMET
KLLNNETVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSEVMNLWRIVWLKLLCLIGHKNSSSERKQ
Q