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Clc05G02170 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G02170
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
Genome locationClcChr05:1492931..1493828
RNA-Seq ExpressionClc05G02170
SyntenyClc05G02170
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048969.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]7.4e-1388.37Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV
        +NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKEV
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV

KAE8650252.1 hypothetical protein Csa_010988 [Cucumis sativus]7.4e-1388.37Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV
        +NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKEV
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV

TYK17596.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]7.4e-1388.37Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV
        +NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKEV
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV

XP_016898949.1 PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo]7.4e-1388.37Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV
        +NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKEV
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV

XP_038885271.1 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g01580 [Benincasa hispida]1.1e-1395.24Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        MNGCG+EALNTFSDMLSYGLKPNGVVFVSLLSACA CGLEKE
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

TrEMBL top hitse value%identityAlignment
A0A0A0L489 Uncharacterized protein3.6e-1388.37Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV
        +NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKEV
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV

A0A1S4DSI8 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g565703.6e-1388.37Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV
        +NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKEV
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV

A0A5A7U647 Putative pentatricopeptide repeat-containing protein3.6e-1388.37Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV
        +NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKEV
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV

A0A5D3D3F0 Putative pentatricopeptide repeat-containing protein3.6e-1388.37Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV
        +NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKEV
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEV

A0A6J1D2H4 pentatricopeptide repeat-containing protein DOT4, chloroplastic isoform X18.8e-1285.71Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        MNGCG+EAL+TFSDMLS GLKPNGV+FVSLLSACA CG+EKE
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

SwissProt top hitse value%identityAlignment
O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic7.7e-0547.62Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        M+GCG+EA++ F  M    +KPNGV F ++  AC+H GL  E
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

Q0WN01 Pentatricopeptide repeat-containing protein At3g585905.9e-0548.89Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEVAG
        ++G G EAL  F + LS G KP+ V F+S+L+AC H G+ KE  G
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEVAG

Q680Z7 Pentatricopeptide repeat-containing protein At1g09220, mitochondrial5.9e-0550Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        ++G G EA++ F DM   GLKPN V  +S+L+AC+H GL +E
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

Q9C6T2 Pentatricopeptide repeat-containing protein At1g319204.5e-0552.38Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        ++G G  AL  FS M+  GL+P+ VV+VS+L+AC+H GL KE
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

Q9CA54 Pentatricopeptide repeat-containing protein At1g746305.3e-0650Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        M+G G EA+  F++M +YG+ P+G+ F+SLL AC+H GL +E
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

Arabidopsis top hitse value%identityAlignment
AT1G09220.1 Pentatricopeptide repeat (PPR) superfamily protein4.2e-0650Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        ++G G EA++ F DM   GLKPN V  +S+L+AC+H GL +E
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

AT1G31920.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.2e-0652.38Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        ++G G  AL  FS M+  GL+P+ VV+VS+L+AC+H GL KE
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

AT1G74630.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.8e-0750Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        M+G G EA+  F++M +YG+ P+G+ F+SLL AC+H GL +E
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.5e-0647.62Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        M+GCG+EA++ F  M    +KPNGV F ++  AC+H GL  E
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

AT3G58590.1 Pentatricopeptide repeat (PPR) superfamily protein4.2e-0648.89Show/hide
Query:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEVAG
        ++G G EAL  F + LS G KP+ V F+S+L+AC H G+ KE  G
Subjt:  MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEVAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGATGTGGGAGTGAGGCACTCAATACATTTTCAGACATGTTAAGTTATGGTTTAAAGCCTAATGGGGTGGTCTTCGTCTCTCTTTTATCTGCTTGTGCTCATTG
TGGATTGGAAAAGGAAGTTGCCGGCTCCCCTATTATGAGGTCACCAACTTCTTTGACTTTTTGGCACTGGGAAGGCGTCATACATGGTCTTACGGCTTTGCAAAGTCCTG
TGTTTTTGGCAAATAATCGTCTGGGCCTAGTTACTGCAACCCCTTCTTCCATATCAAGGCTCTTACTGTATCCAGTTGGAAAACTGATGGATGCACGGAAATTTGTCAGA
GGATGTAGAGGAGCATCACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGGATGTGGGAGTGAGGCACTCAATACATTTTCAGACATGTTAAGTTATGGTTTAAAGCCTAATGGGGTGGTCTTCGTCTCTCTTTTATCTGCTTGTGCTCATTG
TGGATTGGAAAAGGAAGTTGCCGGCTCCCCTATTATGAGGTCACCAACTTCTTTGACTTTTTGGCACTGGGAAGGCGTCATACATGGTCTTACGGCTTTGCAAAGTCCTG
TGTTTTTGGCAAATAATCGTCTGGGCCTAGTTACTGCAACCCCTTCTTCCATATCAAGGCTCTTACTGTATCCAGTTGGAAAACTGATGGATGCACGGAAATTTGTCAGA
GGATGTAGAGGAGCATCACAATAA
Protein sequenceShow/hide protein sequence
MNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEVAGSPIMRSPTSLTFWHWEGVIHGLTALQSPVFLANNRLGLVTATPSSISRLLLYPVGKLMDARKFVR
GCRGASQ