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Clc05G02230 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G02230
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMediator of RNA polymerase II transcription subunit 2-like
Genome locationClcChr05:1517126..1518017
RNA-Seq ExpressionClc05G02230
SyntenyClc05G02230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048973.1 mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. makuwa]9.8e-2896.3Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAM+LDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
KGN56523.1 hypothetical protein Csa_010072 [Cucumis sativus]1.3e-2796.3Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN MKVDGSGKKKKGGGGFQVGKKKVKTKLTA AKAKASQAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
XP_022147302.1 uncharacterized protein LOC111016287 [Momordica charantia]1.6e-2590.12Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKNNLSRRKKQ+EFDL+REK E+EKAAKKLQAKKN+MKVDGSGK+KKGGGGFQVGKKKVKTKLTAAAKAKA+QAMELD+
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
XP_022941890.1 uncharacterized protein LOC111447114 [Cucurbita moschata]1.4e-2693.83Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKKNKMKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
XP_030457135.1 uncharacterized protein LOC115678006 [Syzygium oleosum]3.5e-2590.12Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKN+LSRRKKQYEFDL+REK EKEKAAKKLQAKKNKMKVDGSGKKKKG GGFQVGK+K+KTKLTA AKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
TrEMBL top hitse value%identityAlignment
A0A0A0L493 Uncharacterized protein6.2e-2896.3Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN MKVDGSGKKKKGGGGFQVGKKKVKTKLTA AKAKASQAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
A0A5A7TZC8 Mediator of RNA polymerase II transcription subunit 2-like4.8e-2896.3Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAM+LDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
A0A6J1D208 uncharacterized protein LOC1110162877.6e-2690.12Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKNNLSRRKKQ+EFDL+REK E+EKAAKKLQAKKN+MKVDGSGK+KKGGGGFQVGKKKVKTKLTAAAKAKA+QAMELD+
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
A0A6J1FV29 uncharacterized protein LOC1114471146.9e-2793.83Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKKNKMKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
A0A6J1IED7 uncharacterized protein LOC1114732886.9e-2793.83Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKKNKMKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45860.1 unknown protein9.5e-2173.75Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELD
        MSKKNNL++RKKQ+E++LQ+EK+ ++K  KKL A KNKMKVDGSGKKKK  GGF VGKKK+KTKLT  AKAKA+QAMELD
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTGGAGACGGGGTTTAAGAAAACGGTGATCTTCGCGATATCTGCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAG
GAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTTGATGGTAGTGGAAAGA
AAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTGGAGACGGGGTTTAAGAAAACGGTGATCTTCGCGATATCTGCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAG
GAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTTGATGGTAGTGGAAAGA
AAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGA
Protein sequenceShow/hide protein sequence
MSLETGFKKTVIFAISASKFPAAGRNNMSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK