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Clc05G02850 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G02850
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein LITTLE ZIPPER 1-like
Genome locationClcChr05:1948000..1948421
RNA-Seq ExpressionClc05G02850
SyntenyClc05G02850
Gene Ontology termsNA
InterPro domainsIPR039312 - Protein LITTLE ZIPPER


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN56585.1 hypothetical protein Csa_011002 [Cucumis sativus]1.9e-3983.48Show/hide
Query:  MCHSSRFILTPSYLACR-HRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSS
        MCHSS FILTPSYLACR  RRRP+RVY LLRRMRFAKEE     V+ EMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFS++KPP SS
Subjt:  MCHSSRFILTPSYLACR-HRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSS

Query:  SDLSVCGREIKQNHL
        SDLS C  E KQNHL
Subjt:  SDLSVCGREIKQNHL

XP_022924351.1 protein LITTLE ZIPPER 1-like [Cucurbita moschata]3.1e-2980.58Show/hide
Query:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS
        MC SSR  LT S+L  RHRRRPIRVYRLLRRMRF KEE     V+ EMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFS  K PQ SS
Subjt:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS

Query:  DLS
        +LS
Subjt:  DLS

XP_022980450.1 protein LITTLE ZIPPER 1-like [Cucurbita maxima]9.0e-2979.61Show/hide
Query:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS
        MC SSR  LT S+L  RHRRRPIRVYRLLRRMRF KEE     V+ EMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFS  K PQ  S
Subjt:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS

Query:  DLS
        +LS
Subjt:  DLS

XP_023527865.1 protein LITTLE ZIPPER 1-like isoform X2 [Cucurbita pepo subsp. pepo]6.9e-2980Show/hide
Query:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS
        MC SSR  LT S+L  RHRRRPIRVYRLLRRMRF KEE     V+ EMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFS  KP  SS+
Subjt:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS

XP_038901104.1 protein LITTLE ZIPPER 1-like [Benincasa hispida]8.1e-4691.74Show/hide
Query:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSSDLSVC
        MC SSR ILTPSYLACRHRRRP+RVYRLLRRM+FAKEEVE+EMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLS+LQNFSNHKP Q SSDLS C
Subjt:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSSDLSVC

Query:  GREIKQNHL
        GREIKQNHL
Subjt:  GREIKQNHL

TrEMBL top hitse value%identityAlignment
A0A0A0L3S0 Uncharacterized protein9.3e-4083.48Show/hide
Query:  MCHSSRFILTPSYLACR-HRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSS
        MCHSS FILTPSYLACR  RRRP+RVY LLRRMRFAKEE     V+ EMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFS++KPP SS
Subjt:  MCHSSRFILTPSYLACR-HRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSS

Query:  SDLSVCGREIKQNHL
        SDLS C  E KQNHL
Subjt:  SDLSVCGREIKQNHL

A0A6J1E9A8 protein LITTLE ZIPPER 1-like1.5e-2980.58Show/hide
Query:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS
        MC SSR  LT S+L  RHRRRPIRVYRLLRRMRF KEE     V+ EMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFS  K PQ SS
Subjt:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS

Query:  DLS
        +LS
Subjt:  DLS

A0A6J1F7Z1 protein LITTLE ZIPPER 3-like2.6e-2675.73Show/hide
Query:  MCHSSRFIL---TPSYLACRHRRRPIRVYRLLRRMRFAKEE--VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS
        MC SSRF+L     S L CRH RRPIR+YRL RRMRFAK+   V++EMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ  S  K  QS+S
Subjt:  MCHSSRFIL---TPSYLACRHRRRPIRVYRLLRRMRFAKEE--VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS

Query:  DLS
        DLS
Subjt:  DLS

A0A6J1IF90 protein LITTLE ZIPPER 3-like9.1e-2775.73Show/hide
Query:  MCHSSRFIL---TPSYLACRHRRRPIRVYRLLRRMRFAKEE--VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS
        MC SSRF+L   T S L CRHRRRPIR+YRL RRM+FAK+   V++EMEI+NLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ FS  K  Q +S
Subjt:  MCHSSRFIL---TPSYLACRHRRRPIRVYRLLRRMRFAKEE--VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS

Query:  DLS
        DLS
Subjt:  DLS

A0A6J1IWC5 protein LITTLE ZIPPER 1-like4.3e-2979.61Show/hide
Query:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS
        MC SSR  LT S+L  RHRRRPIRVYRLLRRMRF KEE     V+ EMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFS  K PQ  S
Subjt:  MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEE-----VEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSS

Query:  DLS
        +LS
Subjt:  DLS

SwissProt top hitse value%identityAlignment
F4IG60 Protein LITTLE ZIPPER 12.2e-0952.33Show/hide
Query:  MCHSS--RFILTPSYLACRHRRRP-IRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ
        MC SS   F  TP+ L    + +  +R+ RL RR R  +E  EK+ME+ NLKLY+ENQ+II ENE+L+KKA LLH+EN+ L S LQ
Subjt:  MCHSS--RFILTPSYLACRHRRRP-IRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ

Q9LZX5 Protein LITTLE ZIPPER 21.1e-0858.33Show/hide
Query:  IRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL
        +R+  L RR R  KE  +KEME++NLKL++ENQSII ENE L+KKA LLH EN  L + L
Subjt:  IRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL

Arabidopsis top hitse value%identityAlignment
AT2G45450.1 protein binding1.5e-1052.33Show/hide
Query:  MCHSS--RFILTPSYLACRHRRRP-IRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ
        MC SS   F  TP+ L    + +  +R+ RL RR R  +E  EK+ME+ NLKLY+ENQ+II ENE+L+KKA LLH+EN+ L S LQ
Subjt:  MCHSS--RFILTPSYLACRHRRRP-IRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ

AT3G52770.1 protein binding7.4e-0554.55Show/hide
Query:  MEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL-QNFSNHKPPQSSSD
        ME  N KL++EN  I++ENERLRKKA LL++ENQ LL QL Q  S  K   + S+
Subjt:  MEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL-QNFSNHKPPQSSSD

AT3G60890.1 protein binding7.6e-1058.33Show/hide
Query:  IRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL
        +R+  L RR R  KE  +KEME++NLKL++ENQSII ENE L+KKA LLH EN  L + L
Subjt:  IRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL

AT3G60890.2 protein binding8.4e-0962.26Show/hide
Query:  RRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL
        RR R  KE  +KEME++NLKL++ENQSII ENE L+KKA LLH EN  L + L
Subjt:  RRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCCATTCTTCGCGATTCATCCTCACTCCTTCCTATTTAGCTTGTCGCCATCGCCGCCGTCCTATTCGAGTCTACCGACTCTTGAGGAGGATGAGATTCGCGAAGGA
AGAGGTTGAGAAAGAAATGGAGATAAAGAATTTGAAATTGTACATGGAGAATCAAAGCATTATTGAAGAGAACGAGAGATTGAGAAAGAAAGCGTTTCTTCTTCATAAAG
AGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAACCATAAACCACCGCAGTCTAGCTCCGATTTGAGTGTCTGCGGCCGGGAAATTAAACAAAATCATCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCCATTCTTCGCGATTCATCCTCACTCCTTCCTATTTAGCTTGTCGCCATCGCCGCCGTCCTATTCGAGTCTACCGACTCTTGAGGAGGATGAGATTCGCGAAGGA
AGAGGTTGAGAAAGAAATGGAGATAAAGAATTTGAAATTGTACATGGAGAATCAAAGCATTATTGAAGAGAACGAGAGATTGAGAAAGAAAGCGTTTCTTCTTCATAAAG
AGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAACCATAAACCACCGCAGTCTAGCTCCGATTTGAGTGTCTGCGGCCGGGAAATTAAACAAAATCATCTGTAA
Protein sequenceShow/hide protein sequence
MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSSDLSVCGREIKQNHL