CuGenDBv2

Gene ID	Clc05G03080
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L2, chloroplastic
Genome location	ClcChr05:2128213..2129137
RNA-Seq Expression	Clc05G03080
Synteny	Clc05G03080
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015934 - large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016740 - transferase activity (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR002171 - Ribosomal protein L2 IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QGW14145.1 ribosomal protein L2 [Acer tataricum subsp. ginnala]

5.0e-26

98.39

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

QGX42562.1 ribosomal protein L2 [Toxicodendron vernicifluum]

5.0e-26

98.39

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

TXG48645.1 hypothetical protein EZV62_024520 [Acer yangbiense]

3.9e-26

98.39

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

YP_004563909.1 ribosomal protein L2 [Nelumbo lutea]

1.0e-26

80.25

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK-DMLVSSKMRYTGTMFLGK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K D   + K   +G +  G+
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK-DMLVSSKMRYTGTMFLGK

YP_009715670.1 ribosomal protein L2 [Schotia brachypetala]

5.0e-26

98.39

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

TrEMBL top hits

e value

%identity

Alignment

A0A159BNZ5 50S ribosomal protein L2, chloroplastic

2.4e-26

98.39

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

A0A5C7GVW4 Ribosomal_L2_C domain-containing protein

1.9e-26

98.39

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

A0A649Z9S0 50S ribosomal protein L2, chloroplastic

2.4e-26

98.39

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

D3WC85 ribosomal protein L2

4.9e-27

80.25

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK-DMLVSSKMRYTGTMFLGK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K D   + K   +G +  G+
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK-DMLVSSKMRYTGTMFLGK

F6GPV5 50S ribosomal protein L2, chloroplastic

4.9e-27

80.25

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK-DMLVSSKMRYTGTMFLGK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K D   + K   +G +  G+
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK-DMLVSSKMRYTGTMFLGK

SwissProt top hits

e value

%identity

Alignment

A0A377 50S ribosomal protein L2-A, chloroplastic

1.9e-28

96.77

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNG VDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

A0A398 50S ribosomal protein L2-B, chloroplastic

1.9e-28

96.77

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNG VDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

Q09FY3 50S ribosomal protein L2, chloroplastic

6.6e-29

98.39

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

Q09MB2 50S ribosomal protein L2, chloroplastic

6.6e-29

98.39

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

Q4VZK5 50S ribosomal protein L2, chloroplastic

6.6e-29

98.39

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00830.1 ribosomal protein L2

1.7e-27

93.55

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI GQH CGKGRNARGIITA HRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

ATCG01310.1 ribosomal protein L2

1.7e-27

93.55

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI GQH CGKGRNARGIITA HRGGGHKRLY K
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTG
TGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCCTAAGGATATGTTAGTATCGTCGAAAATGCGGTACACAG
GAACCATGTTCCTGGGAAAAAGCTTGTATCCAAAGATTCGAAGTCCCGAAAAGGAGGAGCTAACAAAGAAGCTTGCAGGAATTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYPKDMLVSSKMRYTGTMFLGKSLYPKIRSPEKEELTKKLAGI

Clc05G03080 (gene) of Watermelon (cordophanus) v2 genome