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Clc05G03280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G03280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionB3 domain-containing protein
Genome locationClcChr05:2261102..2265012
RNA-Seq ExpressionClc05G03280
SyntenyClc05G03280
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily
IPR044837 - B3 domain-containing protein REM16-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650806.1 B3 domain-containing protein Os04g0386900 [Cucumis sativus]1.1e-6988.44Show/hide
Query:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS
        MQS R+PPTELPTMEPQNGE +PLSGKPYHAFILSKSHVAPI NLVLPAKFHSILPAIVIP VL CRGKKWKIDY+GNRRGKALD+KQWRKFVNDN LKS
Subjt:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS

Query:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        GDA VFEL+ECSSSILKFRVQIL GDIPL+LHDKFSGETK+TPI+L+
Subjt:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

XP_022941967.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata]3.4e-6377.55Show/hide
Query:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS
        MQSQ +PP E   M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IP VL+C GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK 
Subjt:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS

Query:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        GDACVFEL+ECSSS++KFRVQILRGDIP +LH+KFSGE+++TPI ++
Subjt:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

XP_022974195.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima]4.0e-6478.91Show/hide
Query:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS
        MQSQ +PPTE   M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IP VL+C GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK 
Subjt:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS

Query:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        GDACVFEL+ECSSS+LKFRVQILRGDIP +LH+KFSGE+++TPI ++
Subjt:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

XP_023539026.1 B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo]1.2e-6377.55Show/hide
Query:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS
        MQSQ +PPTE   M+PQN   LPLSGKPYH  ILSKSHVAPICN+ +PAKFHS+LPAI+IP VL+C GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK 
Subjt:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS

Query:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        GDACVFEL+ECSSS++KFRVQILRGDIP +LH+KFSGE+++TPI ++
Subjt:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

XP_038903804.1 B3 domain-containing protein Os04g0386900-like [Benincasa hispida]2.2e-7594.56Show/hide
Query:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS
        MQSQR+PPTELPTMEPQ+GE LPLSGKPYHAFILSKSHVAPIC+LVLPAKFHSILPAIVIP VLFC+GKKW IDYYGNRRGKALDTKQWRKFVNDNRLKS
Subjt:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS

Query:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        GDACVFELMECSSSILKFRVQILRGDIP QLHDKFSGETKDTPIYLE
Subjt:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

TrEMBL top hitse value%identityAlignment
A0A0A0L3V3 TF-B3 domain-containing protein5.2e-7088.44Show/hide
Query:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS
        MQS R+PPTELPTMEPQNGE +PLSGKPYHAFILSKSHVAPI NLVLPAKFHSILPAIVIP VL CRGKKWKIDY+GNRRGKALD+KQWRKFVNDN LKS
Subjt:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS

Query:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        GDA VFEL+ECSSSILKFRVQIL GDIPL+LHDKFSGETK+TPI+L+
Subjt:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

A0A6J1CYN6 B3 domain-containing protein Os04g0386900-like2.6e-5368.03Show/hide
Query:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS
        MQSQ +PP+E   MEP+  E  PLS KP+H  IL KSHVAP   + LPAKFHS+LPAIVI  V++C GK+W++DYYGNRRG+ LDT+ WRKFV++N LK 
Subjt:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS

Query:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        GDACVFELMECSSS++KFRVQILRGDIP+QLHDKF GE++DTPI ++
Subjt:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

A0A6J1D033 B3 domain-containing protein Os04g0386900-like3.7e-6076.19Show/hide
Query:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS
        MQSQ +PP+E  TMEP+N E  PLS KP+H  IL+KSHVAPI N+ LPAKFHS+LPAIVI  VL+C GK+W +DYYGNRRGK+LDT+ WRKFVNDN LKS
Subjt:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS

Query:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        GDACVFELMECSSS LKFRVQILRGDIP+QLHDKFSGE+KDTPI ++
Subjt:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

A0A6J1FTK2 B3 domain-containing protein Os04g0386900-like1.6e-6377.55Show/hide
Query:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS
        MQSQ +PP E   M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IP VL+C GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK 
Subjt:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS

Query:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        GDACVFEL+ECSSS++KFRVQILRGDIP +LH+KFSGE+++TPI ++
Subjt:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

A0A6J1IDC2 B3 domain-containing protein Os04g0386900-like1.9e-6478.91Show/hide
Query:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS
        MQSQ +PPTE   M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IP VL+C GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK 
Subjt:  MQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKS

Query:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        GDACVFEL+ECSSS+LKFRVQILRGDIP +LH+KFSGE+++TPI ++
Subjt:  GDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

SwissProt top hitse value%identityAlignment
Q2QMT5 B3 domain-containing protein LOC_Os12g400902.5e-0530.53Show/hide
Query:  GKPYHAFILSKSHVAPICNLVLPAKF---------HSILPAIVIPTVLFCRGKKWKIDYYG-NRRGKALDTKQWRKFVNDNRLKSGDACVFELME
        G P    +L  +HV     L++P +F         H IL  ++ P     R +KW + YY  +   +  +  +W KF+ +NRL+ G+ C+FELM+
Subjt:  GKPYHAFILSKSHVAPICNLVLPAKF---------HSILPAIVIPTVLFCRGKKWKIDYYG-NRRGKALDTKQWRKFVNDNRLKSGDACVFELME

Q6AV21 B3 domain-containing protein Os03g06198002.8e-0445.45Show/hide
Query:  LPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRR---GKA-LDTKQWRKFVNDNRLKSGDACVFEL
        LP K H  L       VL C+G  W+I+    RR   GK    T  WRKF +DNRL+ GD C+FEL
Subjt:  LPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRR---GKA-LDTKQWRKFVNDNRLKSGDACVFEL

Q7XLP4 B3 domain-containing protein Os04g03869002.1e-2037.18Show/hide
Query:  HLQMQSQREPPTELPTMEPQNGEN---LPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVN
        H+   ++  PP   P  EP+       LPL GKPY   I+ KSHV P   +V+P  F  +LP+   P  L  RG+ W + + G R  + L+   WR F  
Subjt:  HLQMQSQREPPTELPTMEPQNGEN---LPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVN

Query:  DNRLKSGDACVFELM---ECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE
        DN L+ GD CVFEL+         ++FRVQ+LR +IP ++  +  G T  TPI ++
Subjt:  DNRLKSGDACVFELM---ECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE

Q8RYD1 B3 domain-containing protein REM162.5e-0532.99Show/hide
Query:  LSKSHVAPICNLVLPAKFHSILPAIVI--PTVLFCRGKKW--KIDYYGNRRGKALDTKQWRKFVNDNRLKSGDACVFELMECSSSILKFRVQILRGD
        + +SHV   C L +P K+  +   ++     V+     KW  K + +G R    + T  W+KFV DN L+ GD CVFE     +  L   V I RG+
Subjt:  LSKSHVAPICNLVLPAKFHSILPAIVI--PTVLFCRGKKW--KIDYYGNRRGKALDTKQWRKFVNDNRLKSGDACVFELMECSSSILKFRVQILRGD

Q9LHY9 B3 domain-containing protein Os06g01123001.8e-1438.4Show/hide
Query:  SGKPYHAFILSKSHVAPICNLVLPAKFHSIL--PAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKSGDACVFELMEC-SSSILKFRVQ
        +G P+   +++KSH+ P   + +P +F   L  P      VL   GK W   Y G+ + K LD   W +F  DNRL  GDACVFEL+   ++  L+F+VQ
Subjt:  SGKPYHAFILSKSHVAPICNLVLPAKFHSIL--PAIVIPTVLFCRGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKSGDACVFELMEC-SSSILKFRVQ

Query:  ILRGDIPLQLHDKFSGETKDTPIYL
        ILRG +P ++     G T D PI +
Subjt:  ILRGDIPLQLHDKFSGETKDTPIYL

Arabidopsis top hitse value%identityAlignment
AT4G33280.1 AP2/B3-like transcriptional factor family protein1.8e-0632.99Show/hide
Query:  LSKSHVAPICNLVLPAKFHSILPAIVI--PTVLFCRGKKW--KIDYYGNRRGKALDTKQWRKFVNDNRLKSGDACVFELMECSSSILKFRVQILRGD
        + +SHV   C L +P K+  +   ++     V+     KW  K + +G R    + T  W+KFV DN L+ GD CVFE     +  L   V I RG+
Subjt:  LSKSHVAPICNLVLPAKFHSILPAIVI--PTVLFCRGKKW--KIDYYGNRRGKALDTKQWRKFVNDNRLKSGDACVFELMECSSSILKFRVQILRGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTTCTGAAGAAGGTACGACGACTGAGTGTCTCACCGTCTGCTTGCTTCGAGCTCACAGAGAATACTCGTTTAATTTTAAACGTAATTTTTTGTTGCATTTGTTC
TGCCAACTTTCATCATCTGCAGATGCAGTCACAAAGGGAACCTCCGACAGAGCTTCCAACAATGGAGCCACAAAATGGAGAAAATTTGCCACTTTCAGGCAAACCCTACC
ATGCTTTTATTCTTTCTAAATCGCACGTCGCTCCCATATGTAATTTGGTTTTACCAGCTAAATTCCATTCTATTTTACCTGCTATTGTGATCCCGACGGTTCTTTTCTGT
CGAGGCAAGAAATGGAAGATAGATTATTATGGGAACCGACGCGGTAAGGCACTTGATACAAAACAGTGGAGGAAGTTTGTCAATGATAATCGTCTCAAGTCTGGAGATGC
TTGTGTATTTGAGCTCATGGAATGCAGCAGCAGCATACTTAAATTTAGAGTTCAAATTCTCAGAGGTGACATCCCTTTACAGCTTCACGACAAGTTCAGTGGGGAGACGA
AAGACACCCCCATATACCTTGAGTAG
mRNA sequenceShow/hide mRNA sequence
TCACGTCCCTTTCTCAAGAATGAATGTTCTGAAGAAGGTACGACGACTGAGTGTCTCACCGTCTGCTTGCTTCGAGCTCACAGAGAATACTCGTTTAATTTTAAACGTAA
TTTTTTGTTGCATTTGTTCTGCCAACTTTCATCATCTGCAGATGCAGTCACAAAGGGAACCTCCGACAGAGCTTCCAACAATGGAGCCACAAAATGGAGAAAATTTGCCA
CTTTCAGGCAAACCCTACCATGCTTTTATTCTTTCTAAATCGCACGTCGCTCCCATATGTAATTTGGTTTTACCAGCTAAATTCCATTCTATTTTACCTGCTATTGTGAT
CCCGACGGTTCTTTTCTGTCGAGGCAAGAAATGGAAGATAGATTATTATGGGAACCGACGCGGTAAGGCACTTGATACAAAACAGTGGAGGAAGTTTGTCAATGATAATC
GTCTCAAGTCTGGAGATGCTTGTGTATTTGAGCTCATGGAATGCAGCAGCAGCATACTTAAATTTAGAGTTCAAATTCTCAGAGGTGACATCCCTTTACAGCTTCACGAC
AAGTTCAGTGGGGAGACGAAAGACACCCCCATATACCTTGAGTAGCTTCCCTTTCTGTGGTTCCTTAGTTTTCAAAAGTTCCAAGTTGTTGACATCATATGTGGTTCTAG
AATCAGACAACCCATTTGATATTTAAATCTAGACTGCTCACTGATGCACTGAAGACTTTCATGTGGAGACATTTTCTTCGATGCGTTTACGGTAATTCGGTTTCACTCTA
ATTCAACCTTAAATCTTAGAAGTAATCGCTTGTAAAGGATAACCTTAAATCTTAGAAGTAAACGCTTGTAAAGGATTAAAGACTAGGATAATTGTTGAACTGGTATAGAC
TTTAGATTCTAACTCTGAATTTGAGTTTGGTGCTGTTGGATTCTATGAGCTGAGCATATGTGCATTTAC
Protein sequenceShow/hide protein sequence
MNVLKKVRRLSVSPSACFELTENTRLILNVIFCCICSANFHHLQMQSQREPPTELPTMEPQNGENLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPTVLFC
RGKKWKIDYYGNRRGKALDTKQWRKFVNDNRLKSGDACVFELMECSSSILKFRVQILRGDIPLQLHDKFSGETKDTPIYLE