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Clc05G04085 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G04085
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranslation machinery-associated protein 7
Genome locationClcChr05:2928973..2930583
RNA-Seq ExpressionClc05G04085
SyntenyClc05G04085
Gene Ontology termsNA
InterPro domainsIPR015157 - Translation machinery associated TMA7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4382676.1 hypothetical protein GLYMA_14G136351v4 [Glycine max]4.0e-0752.78Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANLFSSWRSGSLEQKPNRRGPLEVLGSRKVGRNEGS
        MS+KQGGKAKPLK+PK DKK+YDEV    I      A          L+ K  ++G  EVLGSRKV RN+GS
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANLFSSWRSGSLEQKPNRRGPLEVLGSRKVGRNEGS
KAG8656340.1 hypothetical protein MANES_04G124600v8 [Manihot esculenta]4.2e-0444.44Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANLFSSWRS----GSLEQKPNRRGPLEVLGSRKVGR
        MSSKQGGKAKPLKQPK DKKEYDE     ++L    AN+            L  K  ++G     G +K G+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANLFSSWRS----GSLEQKPNRRGPLEVLGSRKVGR
TrEMBL top hitse value%identityAlignment
A0A2P5ELN0 Translation machinery associated TMA5.9e-04100Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDEV
        MSSKQGGKAKPLKQPKVDKKEYDEV
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDEV
A0A6J1CWS4 translation machinery-associated protein 75.9e-04100Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDEV
        MSSKQGGKAKPLKQPKVDKKEYDEV
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDEV
A0A6J1FTB5 translation machinery-associated protein 7-like isoform X25.9e-04100Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDEV
        MSSKQGGKAKPLKQPKVDKKEYDEV
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDEV
A0A6J1JGF3 translation machinery-associated protein 7-like isoform X25.9e-04100Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDEV
        MSSKQGGKAKPLKQPKVDKKEYDEV
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDEV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15270.1 Translation machinery associated TMA79.6e-0795.83Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDE
        MSSKQGGKAKPLKQPK DKKEYDE
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDE
AT3G16040.1 Translation machinery associated TMA74.0e-0587.5Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDE
        MSSKQGGK KPLKQPK  KKEYDE
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCCAAGCAAGGAGGGAAAGCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGAGTACGACGAGGTATGCTTTCAATTTATTATTTTATGGATCCATGCCGC
AAATCTATTTTCTTCCTGGCGATCAGGGAGCTTAGAGCAAAAGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAATGAGGGTTCCCACG
CAAATTCATGGAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCCAAGCAAGGAGGGAAAGCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGAGTACGACGAGGTATGCTTTCAATTTATTATTTTATGGATCCATGCCGC
AAATCTATTTTCTTCCTGGCGATCAGGGAGCTTAGAGCAAAAGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAATGAGGGTTCCCACG
CAAATTCATGGAGGTAGATTACTTGACGACCTGAATTTGCAGACATTTAATTGCTATTGAATCAGTTGATTGTCTTTGTGTTCCTTGTAAAACCCTTGAAAGAAGATAAT
ATGGTGTGGAATTATTATGGAAGTTGAATGCTTCTCAATATTCTGAACTTTCTTTAGCTTTGATATTCTAAACACCAACCCCCCCCCCCCCCCCCCCCCCCCCACTTCTC
TCTCAACTTTTTTCTTTTTTTCCTTTTTTTCTTTTT
Protein sequenceShow/hide protein sequence
MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANLFSSWRSGSLEQKPNRRGPLEVLGSRKVGRNEGSHANSWR