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Clc05G04180 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G04180
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionmultiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like
Genome locationClcChr05:3016377..3019270
RNA-Seq ExpressionClc05G04180
SyntenyClc05G04180
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0016554 - cytidine to uridine editing (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031062.1 Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-2181.58Show/hide
Query:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFA---TSYSLHDPNPNWSNRPPKEQI
        +FSRSFLTATGTA+SASSHSS SLLRRLRPL AIV ADFR LSPA S REFA   TS SL DPNPNWSNRPPKE I
Subjt:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFA---TSYSLHDPNPNWSNRPPKEQI
XP_022142853.1 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Momordica charantia]2.8e-2486.84Show/hide
Query:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLHDPNPNWSNRPPKEQI
        MFSRSFLTATG AVSASSHSSFSLLRRLRPL AIVAADFR LSPAPS REF   ATS SL+DPNPNWSNRPPKE I
Subjt:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLHDPNPNWSNRPPKEQI
XP_038889853.1 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Benincasa hispida]5.2e-2384.21Show/hide
Query:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSLHDPNPNWSNRPPKEQI
        MFSRSFLTATG A+SASSHSSFSLLRRLRPL AIVAADFR LS APSVRE AT   S SL+DPNPNWSNRPPKE I
Subjt:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSLHDPNPNWSNRPPKEQI
XP_038892356.1 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like isoform X1 [Benincasa hispida]3.0e-2384.21Show/hide
Query:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSLHDPNPNWSNRPPKEQI
        MFSRSFLTATG A+SASSHSSFS LRRLRPL AIVAADFR LS APSVREFAT   S SL+DPNPNWSNRPPKE I
Subjt:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSLHDPNPNWSNRPPKEQI
XP_038904331.1 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Benincasa hispida]1.8e-2384.21Show/hide
Query:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSLHDPNPNWSNRPPKEQI
        MFSRSFLTATG A+SASSHSSFSLLRRLRPL A+VAADFR LS APSVREFAT   S SL+DPNPNWSNRPPKE I
Subjt:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSLHDPNPNWSNRPPKEQI
TrEMBL top hitse value%identityAlignment
A0A5A7UT11 Multiple organellar RNA editing factor 88.9e-2180Show/hide
Query:  FSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLHDPNPNWSNRPPKEQI
        FSRSFLTATG A+SASSHSS SLLRRLRPL AI+AADFR  S APSVR+F   ATS SL+DPNPNWSNRPPKE I
Subjt:  FSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLHDPNPNWSNRPPKEQI
A0A5D3CZ72 Multiple organellar RNA editing factor 88.9e-2180Show/hide
Query:  FSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLHDPNPNWSNRPPKEQI
        FSRSFLTATG A+SASSHSS SLLRRLRPL AI+AADFR  S APSVR+F   ATS SL+DPNPNWSNRPPKE I
Subjt:  FSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLHDPNPNWSNRPPKEQI
A0A6J1CPB1 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like1.3e-2486.84Show/hide
Query:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLHDPNPNWSNRPPKEQI
        MFSRSFLTATG AVSASSHSSFSLLRRLRPL AIVAADFR LSPAPS REF   ATS SL+DPNPNWSNRPPKE I
Subjt:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLHDPNPNWSNRPPKEQI
A0A6J1FMC0 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X23.1e-2180.26Show/hide
Query:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSLHDPNPNWSNRPPKEQI
        +FSRSFLTATGTA+SASSHSS  LLRRLRPL AIV ADFR LSPA S REFAT   S SL DPNPNWSNRPPKE I
Subjt:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSLHDPNPNWSNRPPKEQI
A0A6J1FV23 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X13.1e-2180.26Show/hide
Query:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSLHDPNPNWSNRPPKEQI
        +FSRSFLTATGTA+SASSHSS  LLRRLRPL AIV ADFR LSPA S REFAT   S SL DPNPNWSNRPPKE I
Subjt:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSLHDPNPNWSNRPPKEQI
SwissProt top hitse value%identityAlignment
Q9LKA5 Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial6.4e-0850Show/hide
Query:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFR-SLSPAPSVREFATSYSLHDPNPNWSNRPPKEQI
        +F+RSF ++   A S +S    SLL R RPL A  ++ FR  L     +   ATS SL+DPNPNWSNRPPKE I
Subjt:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFR-SLSPAPSVREFATSYSLHDPNPNWSNRPPKEQI
Arabidopsis top hitse value%identityAlignment
AT3G15000.1 cobalt ion binding4.6e-0950Show/hide
Query:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFR-SLSPAPSVREFATSYSLHDPNPNWSNRPPKEQI
        +F+RSF ++   A S +S    SLL R RPL A  ++ FR  L     +   ATS SL+DPNPNWSNRPPKE I
Subjt:  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFR-SLSPAPSVREFATSYSLHDPNPNWSNRPPKEQI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTCGTTCCTTCCTTACTGCGACCGGAACCGCCGTATCCGCTTCTTCTCACTCATCTTTCTCCCTTCTGCGCCGCCTCCGTCCCCTCACTGCTATAGTCGCCGC
TGATTTCCGGTCTCTCTCTCCGGCCCCGAGCGTGAGGGAGTTCGCTACTTCTTACTCTCTCCACGATCCGAATCCTAACTGGTCTAATCGCCCACCCAAGGAGCAGATTG
CCCGATGGCTGTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAGCAAACCTCTTCTGTCGCTTTTTCACTAAAACCCTAATTTTGGGTTCTATGTTCTCTCGTTCCTTCCTTACTGCGACCGGAACCGCCGTATCCGCTTCTTCTCA
CTCATCTTTCTCCCTTCTGCGCCGCCTCCGTCCCCTCACTGCTATAGTCGCCGCTGATTTCCGGTCTCTCTCTCCGGCCCCGAGCGTGAGGGAGTTCGCTACTTCTTACT
CTCTCCACGATCCGAATCCTAACTGGTCTAATCGCCCACCCAAGGAGCAGATTGCCCGATGGCTGTGATTTCGAACACTGGCTCGTTGTCATGGAGAAGCCAGAGGATGA
GCTCACGAGGGATGAGATTATCGACAGCTATATCAAAACGCTTGCCATGGTTGTTGGAAGTGAGGAAGAAGCTAGGATGAAGATATACTCTGTTTCAACCAAATTTTACT
TTTCATGGTTCATTGTTTAGAACTTTCTTACAAAACCGAAGAGCTGCTTAAGTTTAGTTGGGTCGTTCCTGCTTCGTACGCGGATGTTAAGAATAAAGATTATGGAGGGG
AGCCTTTTATAAACGGACAGGCAGTTCCATATGACCCGAAGTAGTACCATAAGGGATTTGTTAGACGACGCACCATCTGCCTAGGATATCAACGATACCTCATGAAACAA
CGAGATTTGCCTCATCGTGCCAAACAATTCCCCTTGATGACGAGGAAACTCTTAAATTGATAAGTTTTCATCACCAAGGAGCTAATTTTGAGGTTTCATGAGAACCCAAC
TTAGTGCTTTCTATGAATTATTTTATGCAGGGCAATAGTTTTGGTCATGATTCCATCCACTTTTCCTCCAGAGTTCACTTTGGATTCTAACATACTAAAACTAGACATCA
AGGACCAGCTGATGCGTGTATATAATATATCCTCATAATCCGTTATCCCTAATACCTAGTCCCATCGCTATTCTGAAATGATGGCCATACCATACGAGTACGACTAACTA
TTGTGCATTTTTCAAGTTTCATTATGAAATACAAACCTGAAAGGTTAAGGGCCTTTTGGATTAGCTTGAGTAAAAGTGTTTTTCAAAAATATCATTTTTATTTAAACTTT
TATTTTTTGAAAAAAATGGTTTATTTTTTATATTAAACACTTGAAAGACGTATTCCAAACACACCTTAGAAACCTGTGAGTGTGGCGCATCGCCTTTCAATGCTTATTTT
CCTTTTAATGTGAAAAAAGACTAGCAGTTAGGGTTGTTAAATTGACCCAACAACTCGAACAATTTGGACTATTTAACTCAAAATGTAAGGGTTGGGTTTGATTTTTTCGT
TGGATGCGGTTCGGCTAAAAAGAATTTGAGTGACATAACTCAATTTGAATTATATATATATATATGTTTCTCTTTGTTTAAATTACTTTGTATTTATTGATGTGTGAATT
TTTAATATTTTTTAAAATTGTAATGATATTTGTCTTTGTGTAAAGTTTGTAATAAATATTCATAGGTATTTGGTATTTAACATTTGGGTTTTTTGAGATTTTAGTTATTA
GTCATATGTTGTGGATAAATTACATAATTTTAATT
Protein sequenceShow/hide protein sequence
MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFATSYSLHDPNPNWSNRPPKEQIARWL