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Clc05G04500 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G04500
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionglycine-rich cell wall structural protein
Genome locationClcChr05:3280142..3280399
RNA-Seq ExpressionClc05G04500
SyntenyClc05G04500
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049179.1 putative PE-PGRS family protein PE_PGRS46 [Cucumis melo var. makuwa]7.5e-2380.28Show/hide
Query:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL
        MEKLFV+ LLV +AAAR VPGGDQ EFV AVEVKAAELPR+ GRGD VRDEKNF+YGG+GGFAGMGGY  L
Subjt:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL

KAE8650313.1 hypothetical protein Csa_010764 [Cucumis sativus]1.2e-2083.08Show/hide
Query:  MLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL
        M LLV VAAAR VPGGDQ EFV AVEVKAAELPR+ GRGDAVRDEKNF+YGG+GGFAGMGGY  L
Subjt:  MLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL

XP_008439361.1 PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS46 [Cucumis melo]2.2e-2278.87Show/hide
Query:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL
        MEKLFV+ LLV +AAAR VPGGDQ EFV AVEVKA ELPR+ GRGD VRDEKNF+YGG+GGFAGMGGY  L
Subjt:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL

XP_011652752.1 glycine-rich protein 23 [Cucumis sativus]5.2e-2484.51Show/hide
Query:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL
        MEKLFVM LLV VAAAR VPGGDQ EFV AVEVKAAELPR+ GRGDAVRDEKNF+YGG+GGFAGMGGY  L
Subjt:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL

XP_038876527.1 glycine-rich protein 23-like [Benincasa hispida]5.7e-2381.69Show/hide
Query:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL
        MEKLFVMLLLV VA AR+VP GD+VEFV+AVEVKA E+P+DGGRGDAV D+KNFVYGGIGGFAGMGGY  L
Subjt:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL

TrEMBL top hitse value%identityAlignment
A0A0A0L460 Uncharacterized protein4.1e-1978.26Show/hide
Query:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGI--GGFAGMGG
        MEKLFVM LLV VAAAR VPGGDQ EFV AVEVKAAELPR+ GRGDAVRDEKNF+YGG+  GG   +GG
Subjt:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGI--GGFAGMGG

A0A1S3AYL0 uncharacterized PE-PGRS family protein PE_PGRS461.1e-2278.87Show/hide
Query:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL
        MEKLFV+ LLV +AAAR VPGGDQ EFV AVEVKA ELPR+ GRGD VRDEKNF+YGG+GGFAGMGGY  L
Subjt:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL

A0A5D3CZJ9 Putative PE-PGRS family protein PE_PGRS463.6e-2380.28Show/hide
Query:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL
        MEKLFV+ LLV +AAAR VPGGDQ EFV AVEVKAAELPR+ GRGD VRDEKNF+YGG+GGFAGMGGY  L
Subjt:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL

A0A6J1G005 glycine-rich cell wall structural protein 1 isoform X27.3e-1670.27Show/hide
Query:  MEKLFVMLLLVVVA---AARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL
        MEKLFVML L VVA   AARNVPG ++V+FV+AV+VKAAEL   G  GDA RDEK F+YGG+GGFAGMGGY  L
Subjt:  MEKLFVMLLLVVVA---AARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL

A0A6J1IHK9 glycine-rich cell wall structural protein3.8e-2078.87Show/hide
Query:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL
        MEKLFVML L VVAAARNVPG +QV+FV+AVEVKAAELP  G  G AVRDEKNF+YGG+GGFAGMGGY  L
Subjt:  MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGCTTTTTGTAATGCTTTTGTTGGTCGTCGTTGCCGCGGCGCGTAACGTTCCGGGCGGGGATCAGGTGGAGTTCGTGAACGCGGTTGAAGTGAAGGCGGCGGA
GCTGCCGAGGGATGGTGGCCGTGGTGATGCTGTTCGTGACGAGAAGAATTTTGTCTATGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGGTACGTACACTTAAAACCAC
TTTTAACCGTTTACAAACACTTCTTATCGCTCCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGCTTTTTGTAATGCTTTTGTTGGTCGTCGTTGCCGCGGCGCGTAACGTTCCGGGCGGGGATCAGGTGGAGTTCGTGAACGCGGTTGAAGTGAAGGCGGCGGA
GCTGCCGAGGGATGGTGGCCGTGGTGATGCTGTTCGTGACGAGAAGAATTTTGTCTATGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGGTACGTACACTTAAAACCAC
TTTTAACCGTTTACAAACACTTCTTATCGCTCCATTAA
Protein sequenceShow/hide protein sequence
MEKLFVMLLLVVVAAARNVPGGDQVEFVNAVEVKAAELPRDGGRGDAVRDEKNFVYGGIGGFAGMGGYVHLKPLLTVYKHFLSLH