; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G04525 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G04525
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr05:3294958..3298903
RNA-Seq ExpressionClc05G04525
SyntenyClc05G04525
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582443.1 S-protein-like 24, partial [Cucurbita argyrosperma subsp. sororia]4.5e-6185.07Show/hide
Query:  SSRRFSKEVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRD
        S+ + S E+  +  Q  EQLY IEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPV+TNFWITTTSQFSCTVKLDR RKSFDAFKVPRD
Subjt:  SSRRFSKEVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRD

Query:  IYRCSTLRKCSWLVMEDGFYFSDDEVNWKKDFSW
        IYRCS LRKC+WLV+EDGFYFSDDEVNWKKDFSW
Subjt:  IYRCSTLRKCSWLVMEDGFYFSDDEVNWKKDFSW

KAG7028781.1 hypothetical protein SDJN02_09962, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-6390.55Show/hide
Query:  EVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTL
        EV+SVD  +T+QLY IEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSW VKTNFWITTTSQFSCTVKLDR R+SFDAFKVPRDIYRCS  
Subjt:  EVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTL

Query:  RKCSWLVMEDGFYFSDDEVNWKKDFSW
        RKCSWLVMEDGFYFSDDEVNWKK+FSW
Subjt:  RKCSWLVMEDGFYFSDDEVNWKKDFSW

TYK17379.1 self-incompatibility family protein [Cucumis melo var. makuwa]1.5e-6195.73Show/hide
Query:  EQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVMED
        EQL+ IEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDR RKSFDAFKVPRDIYRCS LRKCSWLVMED
Subjt:  EQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVMED

Query:  GFYFSDDEVNWKKDFSW
        GFYFSDDEVNWKKDFSW
Subjt:  GFYFSDDEVNWKKDFSW

XP_022147154.1 S-protein homolog 6-like [Momordica charantia]2.6e-6188.98Show/hide
Query:  EVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTL
        E +SVD  +TEQLY IEYEVRVINGFTNNSSLPLVIWCASKD+DIGGRALQEHDDF W V+TNFWI TTSQFSCTVKLDR RKSFDAFKVPRDIYRCS L
Subjt:  EVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTL

Query:  RKCSWLVMEDGFYFSDDEVNWKKDFSW
        RKCSWLVMEDGFYFSDDEV+WKKDFSW
Subjt:  RKCSWLVMEDGFYFSDDEVNWKKDFSW

XP_038876719.1 S-protein homolog 6-like [Benincasa hispida]5.3e-6296.58Show/hide
Query:  EQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVMED
        EQL+ IEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDR RKSFDAFKVPRDIYRCS LRKCSWLVMED
Subjt:  EQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVMED

Query:  GFYFSDDEVNWKKDFSW
        GFYFSDDEVNWKKDFSW
Subjt:  GFYFSDDEVNWKKDFSW

TrEMBL top hitse value%identityAlignment
A0A0A0L6V3 S-protein homolog2.4e-6081.56Show/hide
Query:  TRKDHRSSRRFSKEVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWI-TTTSQFSCTVKLDRARKSFD
        T +++  +  F K+ +   +   EQL+ IEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPVKTNFWI TTTSQFSCTVKLDR RKSFD
Subjt:  TRKDHRSSRRFSKEVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWI-TTTSQFSCTVKLDRARKSFD

Query:  AFKVPRDIYRCSTLRKCSWLVMEDGFYFSDDEVNWKKDFSW
        AFKVPRDIYRCS LRKCSWLVMEDGFYFSDDEVNWKKDFSW
Subjt:  AFKVPRDIYRCSTLRKCSWLVMEDGFYFSDDEVNWKKDFSW

A0A1S4DSD2 S-protein homolog1.8e-6094.92Show/hide
Query:  EQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWI-TTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVME
        EQL+ IEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPVKTNFWI TTTSQFSCTVKLDR RKSFDAFKVPRDIYRCS LRKCSWLVME
Subjt:  EQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWI-TTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVME

Query:  DGFYFSDDEVNWKKDFSW
        DGFYFSDDEVNWKKDFSW
Subjt:  DGFYFSDDEVNWKKDFSW

A0A5A7U6C9 S-protein homolog1.8e-6094.92Show/hide
Query:  EQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWI-TTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVME
        EQL+ IEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPVKTNFWI TTTSQFSCTVKLDR RKSFDAFKVPRDIYRCS LRKCSWLVME
Subjt:  EQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWI-TTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVME

Query:  DGFYFSDDEVNWKKDFSW
        DGFYFSDDEVNWKKDFSW
Subjt:  DGFYFSDDEVNWKKDFSW

A0A5D3D3G0 S-protein homolog7.5e-6295.73Show/hide
Query:  EQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVMED
        EQL+ IEYEVRVINGFTNNSSLPLVIWCASKD DIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDR RKSFDAFKVPRDIYRCS LRKCSWLVMED
Subjt:  EQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVMED

Query:  GFYFSDDEVNWKKDFSW
        GFYFSDDEVNWKKDFSW
Subjt:  GFYFSDDEVNWKKDFSW

A0A6J1D066 S-protein homolog1.3e-6188.98Show/hide
Query:  EVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTL
        E +SVD  +TEQLY IEYEVRVINGFTNNSSLPLVIWCASKD+DIGGRALQEHDDF W V+TNFWI TTSQFSCTVKLDR RKSFDAFKVPRDIYRCS L
Subjt:  EVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTL

Query:  RKCSWLVMEDGFYFSDDEVNWKKDFSW
        RKCSWLVMEDGFYFSDDEV+WKKDFSW
Subjt:  RKCSWLVMEDGFYFSDDEVNWKKDFSW

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 29.0e-0426.98Show/hide
Query:  DQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDI---YRCSTLRK
        D  +T  ++        IN    N  L L+  C SKD D+G R LQ  + +S+     F+  T   + C+        SFD +K  RD     +C + R 
Subjt:  DQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDI---YRCSTLRK

Query:  CSWLVMEDG-FYFSDDEVNWKKDFSW
        C W +  +G   F+D+   +   + W
Subjt:  CSWLVMEDG-FYFSDDEVNWKKDFSW

Arabidopsis top hitse value%identityAlignment
AT1G26798.1 Plant self-incompatibility protein S1 family2.3e-0733.68Show/hide
Query:  VRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRD---IYRCSTLRKCSWLVMEDG
        V +IN  T N    LV+ C +K  D+G  AL+  +   +  + N   TTT  ++CT       K+FD F+V RD      C   R+C W + E G
Subjt:  VRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRD---IYRCSTLRKCSWLVMEDG

AT3G24060.1 Plant self-incompatibility protein S1 family5.7e-3861.26Show/hide
Query:  EYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVMEDGFYFSD
        E++VRVIN F +NSSLPLVIWC S   D+GGRALQE DDF W  K + W +  ++++CT+K D  RK F+AFKV RD  RC + +KCSW V EDGFYFS 
Subjt:  EYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVMEDGFYFSD

Query:  DEVNWKKDFSW
        DEV W KDFSW
Subjt:  DEVNWKKDFSW

AT4G16195.1 Plant self-incompatibility protein S1 family6.4e-0526.98Show/hide
Query:  DQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDI---YRCSTLRK
        D  +T  ++        IN    N  L L+  C SKD D+G R LQ  + +S+     F+  T   + C+        SFD +K  RD     +C + R 
Subjt:  DQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASKDSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDI---YRCSTLRK

Query:  CSWLVMEDG-FYFSDDEVNWKKDFSW
        C W +  +G   F+D+   +   + W
Subjt:  CSWLVMEDG-FYFSDDEVNWKKDFSW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGGGGGAGTGAACTTGAGAGATCTAATCGGTGTCGGTGCCCCCGCGAGGCAGAAACCTCGTTTAGGAAGGCTGTAGAGAAATCTGGAGTAGCAGTAGACTATGT
AGTATGTATAATGAATGATGATTTAGACTTCGCCTTAGGCTTTGACCGCAGCTTTCCAACTCGAAAAGATCATCGGAGCTCACGAAGATTTTCGAAGGAGGTACTTTCAG
TGGACCAACAGGCTACAGAGCAACTGTATTGCATCGAATACGAAGTGCGTGTGATCAATGGCTTCACAAATAACTCCTCACTGCCTCTGGTGATATGGTGCGCTTCAAAA
GACAGTGATATTGGCGGGCGTGCGCTGCAGGAGCATGATGATTTCAGTTGGCCCGTCAAGACCAACTTCTGGATTACTACAACCTCTCAATTCTCATGCACTGTCAAATT
GGACCGTGCAAGGAAGAGTTTTGATGCATTCAAGGTACCAAGAGATATCTATCGCTGTAGTACTCTCAGGAAATGCTCTTGGTTGGTTATGGAAGATGGGTTTTATTTCA
GTGATGATGAAGTAAACTGGAAGAAGGATTTCTCGTGGGCAGGGCCCCGATTCTACGCTAAAGATTTGCCTGACATGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGGGGGAGTGAACTTGAGAGATCTAATCGGTGTCGGTGCCCCCGCGAGGCAGAAACCTCGTTTAGGAAGGCTGTAGAGAAATCTGGAGTAGCAGTAGACTATGT
AGTATGTATAATGAATGATGATTTAGACTTCGCCTTAGGCTTTGACCGCAGCTTTCCAACTCGAAAAGATCATCGGAGCTCACGAAGATTTTCGAAGGAGGTACTTTCAG
TGGACCAACAGGCTACAGAGCAACTGTATTGCATCGAATACGAAGTGCGTGTGATCAATGGCTTCACAAATAACTCCTCACTGCCTCTGGTGATATGGTGCGCTTCAAAA
GACAGTGATATTGGCGGGCGTGCGCTGCAGGAGCATGATGATTTCAGTTGGCCCGTCAAGACCAACTTCTGGATTACTACAACCTCTCAATTCTCATGCACTGTCAAATT
GGACCGTGCAAGGAAGAGTTTTGATGCATTCAAGGTACCAAGAGATATCTATCGCTGTAGTACTCTCAGGAAATGCTCTTGGTTGGTTATGGAAGATGGGTTTTATTTCA
GTGATGATGAAGTAAACTGGAAGAAGGATTTCTCGTGGGCAGGGCCCCGATTCTACGCTAAAGATTTGCCTGACATGATGTAG
Protein sequenceShow/hide protein sequence
MGRGSELERSNRCRCPREAETSFRKAVEKSGVAVDYVVCIMNDDLDFALGFDRSFPTRKDHRSSRRFSKEVLSVDQQATEQLYCIEYEVRVINGFTNNSSLPLVIWCASK
DSDIGGRALQEHDDFSWPVKTNFWITTTSQFSCTVKLDRARKSFDAFKVPRDIYRCSTLRKCSWLVMEDGFYFSDDEVNWKKDFSWAGPRFYAKDLPDMM