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Clc05G04610 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G04610
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box domain-containing protein
Genome locationClcChr05:3354338..3357167
RNA-Seq ExpressionClc05G04610
SyntenyClc05G04610
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK17370.1 F-box family protein [Cucumis melo var. makuwa]6.7e-12588.1Show/hide
Query:  MEQSDFLGERARWKAR-------KKKRENVSDGRGQQN-GTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLG
        M QSDFL   ARWK R       KKKRE VSD RGQQN  T N +LQDPF VLGSDLLM I SYLDARSVALSLLVSRSWYAVASSDRLWSSKC+ELW G
Subjt:  MEQSDFLGERARWKAR-------KKKRENVSDGRGQQN-GTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLG

Query:  KAHIPRLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFV
        KAHIPRLAQSRGLPKLAAYSLS+MDGKRTRI+REDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFV
Subjt:  KAHIPRLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFV

Query:  GDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
        GDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSY SIAD +KAGGTGPL
Subjt:  GDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL

XP_004134023.1 uncharacterized protein LOC101220252 isoform X2 [Cucumis sativus]3.2e-12791.5Show/hide
Query:  MEQSDFLGERARWKAR--KKKRENVSDGRGQQNG-TPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIP
        M QSDFLG  ARWK+R  KKKRE VSD RGQQN  T N LLQDPF VLGSDLL+AI SYLDARSVALSL VSRSWYAVASSDRLWSSKCMELWLGKAHIP
Subjt:  MEQSDFLGERARWKAR--KKKRENVSDGRGQQNG-TPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIP

Query:  RLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEI
        RLAQSRGLPKLAAYSLSVMDGKRTRI+REDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDG+QTADPDDRVWGGHESCFSTVTSFVGDGEI
Subjt:  RLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEI

Query:  REHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
        REHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD EK GGTGPL
Subjt:  REHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL

XP_008438422.1 PREDICTED: uncharacterized protein LOC103483521 isoform X1 [Cucumis melo]1.4e-12588.19Show/hide
Query:  MEQSDFLGERARWKAR---------KKKRENVSDGRGQQN-GTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELW
        M QSDFL   ARWK R         KKKRE VSD RGQQN  T N +LQDPF VLGSDLLM I SYLDARSVALSLLVSRSWYAVASSDRLWSSKC+ELW
Subjt:  MEQSDFLGERARWKAR---------KKKRENVSDGRGQQN-GTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELW

Query:  LGKAHIPRLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS
        LGKAHIPRLAQSRGLPKLAAYSLS+MDGKRTRI+REDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS
Subjt:  LGKAHIPRLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS

Query:  FVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
        FVGDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD +KAGGTGPL
Subjt:  FVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL

XP_031738349.1 uncharacterized protein LOC101220252 isoform X1 [Cucumis sativus]3.9e-12588.98Show/hide
Query:  MEQSDFLGERARWKAR--KKKRENVSDGRGQQNG-TPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIP
        M QSDFLG  ARWK+R  KKKRE VSD RGQQN  T N LLQDPF VLGSDLL+AI SYLDARSVALSL VSRSWYAVASSDRLWSSKCMELWLGKAHIP
Subjt:  MEQSDFLGERARWKAR--KKKRENVSDGRGQQNG-TPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIP

Query:  RLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNK-------EAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS
        RLAQSRGLPKLAAYSLSVMDGKRTRI+REDLCDHAWQFHFNK       EAPVYWRDLDPYWQGSHPLMRRYFHPDG+QTADPDDRVWGGHESCFSTVTS
Subjt:  RLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNK-------EAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS

Query:  FVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
        FVGDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD EK GGTGPL
Subjt:  FVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL

XP_038875840.1 uncharacterized protein LOC120068200 [Benincasa hispida]7.4e-13293.85Show/hide
Query:  MEQSDFLGERARWKARKKKRENVSDGRGQQNGTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLA
        M QSD LG  ARWK RKKKRENVSDGR QQNGT NVLLQDPF VLGSDL MAI SYLDARSVALSLLVSRSWYA+ASSDRLWSSKC ELWLGKAHIPRLA
Subjt:  MEQSDFLGERARWKARKKKRENVSDGRGQQNGTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLA

Query:  QSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREH
        QSRGLPKLAAYSLSVMDGKRTRI+REDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCF TVTSFVGDGEIREH
Subjt:  QSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREH

Query:  YVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
        YVRIN+WPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
Subjt:  YVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL

TrEMBL top hitse value%identityAlignment
A0A0A0L471 F-box domain-containing protein1.6e-12791.5Show/hide
Query:  MEQSDFLGERARWKAR--KKKRENVSDGRGQQNG-TPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIP
        M QSDFLG  ARWK+R  KKKRE VSD RGQQN  T N LLQDPF VLGSDLL+AI SYLDARSVALSL VSRSWYAVASSDRLWSSKCMELWLGKAHIP
Subjt:  MEQSDFLGERARWKAR--KKKRENVSDGRGQQNG-TPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIP

Query:  RLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEI
        RLAQSRGLPKLAAYSLSVMDGKRTRI+REDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDG+QTADPDDRVWGGHESCFSTVTSFVGDGEI
Subjt:  RLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEI

Query:  REHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
        REHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD EK GGTGPL
Subjt:  REHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL

A0A1S3AWZ4 uncharacterized protein LOC103483521 isoform X16.5e-12688.19Show/hide
Query:  MEQSDFLGERARWKAR---------KKKRENVSDGRGQQN-GTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELW
        M QSDFL   ARWK R         KKKRE VSD RGQQN  T N +LQDPF VLGSDLLM I SYLDARSVALSLLVSRSWYAVASSDRLWSSKC+ELW
Subjt:  MEQSDFLGERARWKAR---------KKKRENVSDGRGQQN-GTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELW

Query:  LGKAHIPRLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS
        LGKAHIPRLAQSRGLPKLAAYSLS+MDGKRTRI+REDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS
Subjt:  LGKAHIPRLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS

Query:  FVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
        FVGDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD +KAGGTGPL
Subjt:  FVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL

A0A5A7U1A5 F-box family protein4.2e-12587.75Show/hide
Query:  MEQSDFLGERARWKAR--------KKKRENVSDGRGQQN-GTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWL
        M QSDFL   ARWK R        KKKRE VSD RGQQN  T N +LQDPF VLGSDLLM I SYLDARSVALSLLVSRSWYAVASSDRLWSSKC+ELW 
Subjt:  MEQSDFLGERARWKAR--------KKKRENVSDGRGQQN-GTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWL

Query:  GKAHIPRLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSF
        GKAHIPRLAQSRGLPKLAAYSLS+MDGKRTRI+REDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSF
Subjt:  GKAHIPRLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSF

Query:  VGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
        VGDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSY SIAD +KAGGTGPL
Subjt:  VGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL

A0A5D3D180 F-box family protein3.2e-12588.1Show/hide
Query:  MEQSDFLGERARWKAR-------KKKRENVSDGRGQQN-GTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLG
        M QSDFL   ARWK R       KKKRE VSD RGQQN  T N +LQDPF VLGSDLLM I SYLDARSVALSLLVSRSWYAVASSDRLWSSKC+ELW G
Subjt:  MEQSDFLGERARWKAR-------KKKRENVSDGRGQQN-GTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLG

Query:  KAHIPRLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFV
        KAHIPRLAQSRGLPKLAAYSLS+MDGKRTRI+REDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFV
Subjt:  KAHIPRLAQSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFV

Query:  GDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
        GDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSY SIAD +KAGGTGPL
Subjt:  GDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL

A0A6J1E9U6 uncharacterized protein LOC1114320223.1e-12084.84Show/hide
Query:  MEQSDFLGERARWKARKKKRENVSDGRGQQNGTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLA
        M QSDFL    + + +KKKRE+VSD +GQQNGT N LLQDPF VLG DLLM I SY+DARSVALSLLVSRSWYAVASSDRLW+SKCMELWLGKAHIPRLA
Subjt:  MEQSDFLGERARWKARKKKRENVSDGRGQQNGTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLA

Query:  QSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREH
        ++R   +LAAYSLS+MDGKRTRI+REDLC HAWQFHFNKEAP+YWR+LDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHE CFSTVTSF+GDGEIREH
Subjt:  QSRGLPKLAAYSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREH

Query:  YVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL
        YVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADA+K  GTGPL
Subjt:  YVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAAAGCGACTTCCTCGGCGAAAGAGCGCGGTGGAAAGCAAGGAAGAAGAAGCGAGAGAATGTCTCGGATGGACGAGGGCAACAAAATGGAACCCCAAATGTTCT
TCTCCAAGATCCTTTCGTGGTGTTAGGTTCTGATCTATTAATGGCGATATTCAGCTACCTCGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACG
CCGTAGCTTCCAGCGATCGCCTATGGAGTTCGAAGTGCATGGAACTGTGGCTCGGGAAAGCACATATCCCTAGATTGGCACAAAGCCGAGGTCTTCCAAAGCTGGCTGCT
TATTCGCTATCTGTCATGGATGGCAAGCGAACTCGCATTTTGAGGGAGGATTTATGTGATCATGCCTGGCAATTTCACTTCAATAAGGAAGCTCCGGTCTACTGGCGAGA
TCTTGATCCGTATTGGCAAGGCAGCCACCCTCTCATGCGTCGTTATTTCCATCCTGATGGGAGCCAAACTGCAGATCCTGATGATAGAGTATGGGGTGGCCATGAAAGCT
GCTTTTCCACAGTCACAAGTTTTGTTGGCGACGGGGAGATCAGAGAACACTATGTGAGGATAAACAGATGGCCAAGAATGTTTGTGTCAAGGAATGAAGATTGGAGCTGG
AAGATGTCGAATCACTTCACCTCGTACTCGAGCATAGCCGATGCTGAAAAGGCTGGCGGGACGGGTCCCCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCAAAGCGACTTCCTCGGCGAAAGAGCGCGGTGGAAAGCAAGGAAGAAGAAGCGAGAGAATGTCTCGGATGGACGAGGGCAACAAAATGGAACCCCAAATGTTCT
TCTCCAAGATCCTTTCGTGGTGTTAGGTTCTGATCTATTAATGGCGATATTCAGCTACCTCGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACG
CCGTAGCTTCCAGCGATCGCCTATGGAGTTCGAAGTGCATGGAACTGTGGCTCGGGAAAGCACATATCCCTAGATTGGCACAAAGCCGAGGTCTTCCAAAGCTGGCTGCT
TATTCGCTATCTGTCATGGATGGCAAGCGAACTCGCATTTTGAGGGAGGATTTATGTGATCATGCCTGGCAATTTCACTTCAATAAGGAAGCTCCGGTCTACTGGCGAGA
TCTTGATCCGTATTGGCAAGGCAGCCACCCTCTCATGCGTCGTTATTTCCATCCTGATGGGAGCCAAACTGCAGATCCTGATGATAGAGTATGGGGTGGCCATGAAAGCT
GCTTTTCCACAGTCACAAGTTTTGTTGGCGACGGGGAGATCAGAGAACACTATGTGAGGATAAACAGATGGCCAAGAATGTTTGTGTCAAGGAATGAAGATTGGAGCTGG
AAGATGTCGAATCACTTCACCTCGTACTCGAGCATAGCCGATGCTGAAAAGGCTGGCGGGACGGGTCCCCTTTAA
Protein sequenceShow/hide protein sequence
MEQSDFLGERARWKARKKKRENVSDGRGQQNGTPNVLLQDPFVVLGSDLLMAIFSYLDARSVALSLLVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLAQSRGLPKLAA
YSLSVMDGKRTRILREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSW
KMSNHFTSYSSIADAEKAGGTGPL