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Clc05G06000 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G06000
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionvegetative cell wall protein gp1
Genome locationClcChr05:4356859..4357978
RNA-Seq ExpressionClc05G06000
SyntenyClc05G06000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597407.1 hypothetical protein SDJN03_10587, partial [Cucurbita argyrosperma subsp. sororia]8.4e-5368.89Show/hide
Query:  MSCNYPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MSC  PF FTLIRKTLPIYY    SSNL+ P FLSH +FLP  +SAP SRF+L G SPEFP+KSP+P PS PLEIPQ S  PE+DP TP ELP +TPGPD
Subjt:  MSCNYPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPPL-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP
        FP L     PGPD P PP+PSPP I+VP+PPH+PPDIEPPRPG PVP PDILPP PPE  PPRP GPEI+TSPS+    P
Subjt:  FPPL-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP

TYK17238.1 hypothetical protein E5676_scaffold434G00890 [Cucumis melo var. makuwa]4.6e-5169.78Show/hide
Query:  MSCNYPFCFTLIRKTLPIYYP-SSNLISPFFLSHPQFLPCND-SAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDF
        MSC   F FTLI KTLP YYP SSN ++P   SH QFL  N+ S   SR MLSG SPEFPK  PVPPPS PLEIPQFSPPPE+DPSTPSELPSITP PDF
Subjt:  MSCNYPFCFTLIRKTLPIYYP-SSNLISPFFLSHPQFLPCND-SAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDF

Query:  PP--LPGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPS------GPEIVTSPSTRGFVP
        P    PGP+FPKPP PSPP I+VPVPP +PPDIEPP PG PVP P+ILPP PPEE+PPRP       GPEI+TSPS   FVP
Subjt:  PP--LPGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPS------GPEIVTSPSTRGFVP

XP_022949559.1 vegetative cell wall protein gp1 [Cucurbita moschata]5.5e-5268.33Show/hide
Query:  MSCNYPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MSC  PF FTLIRKTLPIYY    SSNL+ P F SH +FLP  +SAP SRF+L G SPEFP+KSP+P PS PLEIPQ S  PE+DP TP ELP +TPGPD
Subjt:  MSCNYPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPPL-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP
        FP L     PGPD P PP+PSPP I+VP+PPH+PPDIEPPRPG PVP PDILPP PPE  PPRP GPEI+TSPS+    P
Subjt:  FPPL-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP

XP_022975412.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.7e-5370Show/hide
Query:  MSCNYPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MSC  PF FTLIRKTLPIYY    SSNL+ P FLSH +FLP  +SAP SRF+L G SPEFP+KSP+P PS PLEIPQ S  PE+DP TP ELP ITPGPD
Subjt:  MSCNYPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPPL-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP
        FP L     PGPDFP PP+PSPP I+VP+PPH+PPDIEPPRPG PVP PDILPP PPE  PPRP GPEI TSPS+    P
Subjt:  FPPL-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP

XP_023539404.1 pistil-specific extensin-like protein [Cucurbita pepo subsp. pepo]5.1e-5067.8Show/hide
Query:  MSCNYPFCFTLIRKTLPIYYPSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDFPP
        MSC  PF FTL+RKTLPIYY SS+  S  FLSH +FLP  +SAP SRF+L G SPEFP+KSP+P PS PLE+PQ S  P +DP TP ELP ITPGPDFP 
Subjt:  MSCNYPFCFTLIRKTLPIYYPSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDFPP

Query:  L-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP
        L     PGPD P PP+PSPP I+VP+PPH+PPDIEPPRPG PVP PDILPP PPE  PPRP GPEI+TSPS+    P
Subjt:  L-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP

TrEMBL top hitse value%identityAlignment
A0A0A0L4M0 Uncharacterized protein7.2e-5069.06Show/hide
Query:  MSCNYPFCFTLIRKTLPIYYPSSN--LISPFFLSHPQFLPCND-SAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MS    F FTLIRKTLP YYP S+   I+PF  SH QFLP N+  A  S  +LSG SPEFP+  PVPPPSFPLEIPQFSPPPE+DPSTPSELPSITP P+
Subjt:  MSCNYPFCFTLIRKTLPIYYPSSN--LISPFFLSHPQFLPCND-SAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPPL-PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPS------GPEIVTSPSTRGFV
        FPP  PGP+FPKPPLPSPP I+VP+PP +PP+IEPP PG PVP P+ILPP PPEEVPPRP       GPEI+TS S  GFV
Subjt:  FPPL-PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPS------GPEIVTSPSTRGFV

A0A200Q4G4 Uncharacterized protein4.3e-1051.72Show/hide
Query:  PEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTP---SELPSITPGPDFPPLPGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEE
        PEFP  +    PSFP E+P    PPE+DP  P   +E P  TPGPD   LPGPDFP PPLPSPP  ++P+P   PPDI PP+P      PD LPP PP  
Subjt:  PEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTP---SELPSITPGPDFPPLPGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEE

Query:  VPPRPSGPEIVTSPST
        VPP  + P+I+  P T
Subjt:  VPPRPSGPEIVTSPST

A0A5D3D162 Uncharacterized protein2.2e-5169.78Show/hide
Query:  MSCNYPFCFTLIRKTLPIYYP-SSNLISPFFLSHPQFLPCND-SAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDF
        MSC   F FTLI KTLP YYP SSN ++P   SH QFL  N+ S   SR MLSG SPEFPK  PVPPPS PLEIPQFSPPPE+DPSTPSELPSITP PDF
Subjt:  MSCNYPFCFTLIRKTLPIYYP-SSNLISPFFLSHPQFLPCND-SAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDF

Query:  PP--LPGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPS------GPEIVTSPSTRGFVP
        P    PGP+FPKPP PSPP I+VPVPP +PPDIEPP PG PVP P+ILPP PPEE+PPRP       GPEI+TSPS   FVP
Subjt:  PP--LPGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPS------GPEIVTSPSTRGFVP

A0A6J1GD64 vegetative cell wall protein gp12.6e-5268.33Show/hide
Query:  MSCNYPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MSC  PF FTLIRKTLPIYY    SSNL+ P F SH +FLP  +SAP SRF+L G SPEFP+KSP+P PS PLEIPQ S  PE+DP TP ELP +TPGPD
Subjt:  MSCNYPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPPL-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP
        FP L     PGPD P PP+PSPP I+VP+PPH+PPDIEPPRPG PVP PDILPP PPE  PPRP GPEI+TSPS+    P
Subjt:  FPPL-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP

A0A6J1IL49 leucine-rich repeat extensin-like protein 38.2e-5470Show/hide
Query:  MSCNYPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MSC  PF FTLIRKTLPIYY    SSNL+ P FLSH +FLP  +SAP SRF+L G SPEFP+KSP+P PS PLEIPQ S  PE+DP TP ELP ITPGPD
Subjt:  MSCNYPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPPL-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP
        FP L     PGPDFP PP+PSPP I+VP+PPH+PPDIEPPRPG PVP PDILPP PPE  PPRP GPEI TSPS+    P
Subjt:  FPPL-----PGPDFPKPPLPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTGCAACTACCCCTTCTGTTTCACTCTCATCAGAAAAACGCTTCCTATTTATTACCCATCTTCCAATTTGATCTCCCCTTTCTTCCTTTCCCATCCCCAATTCCT
CCCCTGTAATGACTCTGCGCCTTTCTCGCGTTTTATGCTTTCCGGGCACTCGCCGGAGTTTCCCAAAAAAAGCCCCGTTCCACCGCCTTCTTTTCCCCTCGAAATTCCAC
AATTTTCGCCTCCTCCGGAGGTTGACCCGAGCACTCCGTCGGAGCTTCCGTCGATAACTCCGGGGCCGGATTTTCCTCCGCTGCCAGGACCGGACTTTCCGAAGCCTCCG
TTGCCGTCGCCTCCGGAAATTGAGGTTCCGGTCCCGCCCCATCAGCCTCCAGATATAGAGCCACCGCGGCCTGGTTTGCCGGTACCAAGCCCGGACATTTTGCCGCCGCT
GCCACCGGAAGAGGTGCCGCCGAGGCCCTCTGGTCCGGAGATTGTGACGTCGCCATCTACACGTGGTTTTGTTCCTCAAATGCCCATTTAG
mRNA sequenceShow/hide mRNA sequence
GGATTTTAGAATTGTACACGTGTATGCATAAGCATCCAATTGTGAAACACGTGTCACGAAGACGCTCATTTCCCCTTCTTCCTCGGTGACCTAACAGAGCTAAAACGGCT
GGGGTTCCGCAGAAGAACTGCAATTGCCGTAAAAATGTCCTGCAACTACCCCTTCTGTTTCACTCTCATCAGAAAAACGCTTCCTATTTATTACCCATCTTCCAATTTGA
TCTCCCCTTTCTTCCTTTCCCATCCCCAATTCCTCCCCTGTAATGACTCTGCGCCTTTCTCGCGTTTTATGCTTTCCGGGCACTCGCCGGAGTTTCCCAAAAAAAGCCCC
GTTCCACCGCCTTCTTTTCCCCTCGAAATTCCACAATTTTCGCCTCCTCCGGAGGTTGACCCGAGCACTCCGTCGGAGCTTCCGTCGATAACTCCGGGGCCGGATTTTCC
TCCGCTGCCAGGACCGGACTTTCCGAAGCCTCCGTTGCCGTCGCCTCCGGAAATTGAGGTTCCGGTCCCGCCCCATCAGCCTCCAGATATAGAGCCACCGCGGCCTGGTT
TGCCGGTACCAAGCCCGGACATTTTGCCGCCGCTGCCACCGGAAGAGGTGCCGCCGAGGCCCTCTGGTCCGGAGATTGTGACGTCGCCATCTACACGTGGTTTTGTTCCT
CAAATGCCCATTTAGTGTGAACTACTTCAATAGGCTTTTCTTTAGACATGAGAAACTGCAATGCTCATAAGTACTCATATCTGTGATGATCTATACTGCTTTTGGTATTA
TCATAGTGCATAAGGACTTTATATATCTCACCCAATTGACAAACTAAACAGCAGTTGAAAGGCAGGTTGTAGTGCTACTCCCTTCGTTGGTGTTGGATTAAGCTTATCAT
TTAAGACAATATTAAGTTCTTCAAACTCATCTTATTTTCTCTCCAACTAATATTAAACTATTAACTGATTAGATCTTCCATATATTTTGAGCTACAGACTAGGGAAATTA
TTCACCTTTCGACTCAATTGATGCTCTCTTTTAAAAGCATGGTTTTTATTAAACGAACATATATTTGTTTTAAGGACACGTGTTTTAAGAGATGAGCAATTGTTGATAAA
AGCGATTAGGTGAAACTTAC
Protein sequenceShow/hide protein sequence
MSCNYPFCFTLIRKTLPIYYPSSNLISPFFLSHPQFLPCNDSAPFSRFMLSGHSPEFPKKSPVPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDFPPLPGPDFPKPP
LPSPPEIEVPVPPHQPPDIEPPRPGLPVPSPDILPPLPPEEVPPRPSGPEIVTSPSTRGFVPQMPI