; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G06240 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G06240
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein RDM1-like
Genome locationClcChr05:4610168..4612375
RNA-Seq ExpressionClc05G06240
SyntenyClc05G06240
Gene Ontology termsGO:0044030 - regulation of DNA methylation (biological process)
GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domainsIPR015270 - Protein RDM1, plant
IPR036319 - RDM1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582316.1 Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]7.5e-9497.7Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPS+DDFKIPAKEMT+EGMLIKRAEMYQEYMKQIQIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_022955802.1 protein RDM1 [Cucurbita moschata]7.5e-9497.7Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPS+DDFKIPAKEMT+EGMLIKRAEMYQEYMKQIQIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_022979547.1 protein RDM1-like [Cucurbita maxima]4.4e-9498.28Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPSLDDFKIPAKEMT+EGMLIKRAEMYQEYMKQIQIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_023527197.1 protein RDM1 [Cucurbita pepo subsp. pepo]3.7e-9397.13Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPS+DDFKIPAKEMT+EG LIKRAEMYQEYMKQIQIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_038877941.1 protein RDM1 [Benincasa hispida]2.0e-9498.85Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
TrEMBL top hitse value%identityAlignment
A0A0A0L8M0 Uncharacterized protein4.9e-9193.68Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE  +QND +EFKPSLDDFKIPAKEMTSEGML+KRAEMYQEYMKQIQIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A1S3AWI8 protein RDM11.3e-9195.4Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQND +EFKPSLDDFKIPAKEMTSEGML+KRAEMYQEYMKQIQIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A5D3D0B3 Protein RDM12.2e-9194.83Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQND +EFKPSLDDFKIPAKEMTSEGML+KRAEMYQEYMKQIQIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A6J1GV10 protein RDM13.6e-9497.7Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPS+DDFKIPAKEMT+EGMLIKRAEMYQEYMKQIQIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A6J1INZ9 protein RDM1-like2.1e-9498.28Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPSLDDFKIPAKEMT+EGMLIKRAEMYQEYMKQIQIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
SwissProt top hitse value%identityAlignment
Q9LUJ3 Protein RDM11.4e-4755.7Show/hide
Query:  SGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQ+ IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RF
Subjt:  SGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF

Query:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
Arabidopsis top hitse value%identityAlignment
AT3G22680.1 RNA-DIRECTED DNA METHYLATION 11.0e-4855.7Show/hide
Query:  SGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQ+ IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RF
Subjt:  SGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF

Query:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCGGAAACAGGAGTACAAAATGATGTATTTGAGTTCAAGCC
TTCCCTGGACGATTTCAAAATTCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATTAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCAG
AACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGAAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGG
GATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGTAC
CTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCGTATGTTGACTCCATTTTCCCCCAACTATGA
mRNA sequenceShow/hide mRNA sequence
TTAAAGGTAGGAATTCTCAAATTTACGTAGTTCCACAAATTTGATTTCATGTGTGTATTTTAGAAAACATTATCAATGGAGAATTGGAGATGAAGATTTTGTGAACCGGC
GGTCCTGGCCTATGGAAATAGTCATTGAAATTACTAAACCGGCCTTTTGAACCAATCCTAAACACCTTTGATCTCCCATCGCGCAAAAGCAAAACGCCGCAAAACTCAAA
ACTGGTCTCTCCATCAAAGTTCGAGCTTGTTGAATTACTGAGCTCTACTGGCTTTCCGTCCCGAAACCCACATCGGAGAACAGCTTCAGCTTTACGATTCGACGCGCTCT
CTTTCTTTTCGAAATACTAAGAATTACATAATTTACGAAATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTC
GGAAACAGGAGTACAAAATGATGTATTTGAGTTCAAGCCTTCCCTGGACGATTTCAAAATTCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATTAAAAGGGCGGAAA
TGTATCAAGAATACATGAAACAGATCCAGATCCCAGCAGAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGAAAATCTATAAAGCAGCTTTATGGTCAG
CCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGA
AGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGTACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCGTATGTTGACTCCATTT
TCCCCCAACTATGAAGGCTGCTTTCAGTTATGTTCTGCGCTGTGTTGATATACTATAACATATTTCTAGAAGGCTAACATGTCAGTGACAATGTGAATTGTAATAGAAAC
AGCATAGTTCTTTTGGCACATTCAACTTTAATGTGTAGGTTTCTTATAAACTGACAGGGAAGAAGCTCCAGCATTGCTTCTTCTGTCATTGTTGCCATTTGTCTGTTCAC
TAGTTGACTGCATTTACTTTTGTAGCAAAGAACGAATGTAAATCAATATCGAAAATGCATATTTTATCATACAGTTCTTTCCTATCTGAGAATTATATTAC
Protein sequenceShow/hide protein sequence
MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAERGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQW
DQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL