CuGenDBv2

Gene ID	Clc05G06410
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	pre-rRNA-processing protein TSR2 homolog
Genome location	ClcChr05:4726000..4729116
RNA-Seq Expression	Clc05G06410
Synteny	Clc05G06410
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005634 - nucleus (cellular component)
InterPro domains	IPR019398 - Pre-rRNA-processing protein TSR2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004134444.1 pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus]

1.3e-49

92.79

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Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGL STNYKAGS+S+LQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLV
         LMMIYEENLV
Subjt:  HLMMIYEENLV

XP_008438673.1 PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]

1.9e-48

92.86

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Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA
        ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVA
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA

Query:  EHLMMIYEENLV
        E LMMIYEENLV
Subjt:  EHLMMIYEENLV

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]

7.9e-50

93.69

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Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLV
         LMMIYEENLV
Subjt:  HLMMIYEENLV

XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]

3.3e-48

91.96

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Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA
        ME IDGL STNYKAGS+S+LQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVA
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA

Query:  EHLMMIYEENLV
        E LMMIYEENLV
Subjt:  EHLMMIYEENLV

XP_038881388.1 pre-rRNA-processing protein TSR2 homolog [Benincasa hispida]

7.9e-50

93.69

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Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MESIDGL STNYKAGS+SSLQ AISSVFSRWDGLQMAIEN+WGGRDSHQKSLNLASDVF+WFSQSKPPLYVEDLE LLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLV
         LMMIYEENLV
Subjt:  HLMMIYEENLV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7I9 Uncharacterized protein

6.5e-50

92.79

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Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGL STNYKAGS+S+LQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLV
         LMMIYEENLV
Subjt:  HLMMIYEENLV

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X2

3.8e-50

93.69

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Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLV
         LMMIYEENLV
Subjt:  HLMMIYEENLV

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X1

9.4e-49

92.86

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Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA
        ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVA
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA

Query:  EHLMMIYEENLV
        E LMMIYEENLV
Subjt:  EHLMMIYEENLV

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X2

3.8e-50

93.69

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Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLV
         LMMIYEENLV
Subjt:  HLMMIYEENLV

A0A6J1C959 pre-rRNA-processing protein TSR2 homolog

1.4e-47

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Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME  DGLASTNYKAGS+S LQ AISSVFSRWDGLQMAI+N+WGGRDSHQKSLNLASDVFSWFS+SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENL
         LMMIYEE+L
Subjt:  HLMMIYEENL

SwissProt top hits

e value

%identity

Alignment

Q06672 Pre-rRNA-processing protein TSR2

2.8e-05

34.78

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Query:  QMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLS----FNTEIEDGSIEQVAEHLMMIYEE
        ++ +S V  +WD L +A+EN WGG DS +K   +   V   F   K    V D   L+ ETLL +    F T +ED S   +A  ++ IY +
Subjt:  QMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLS----FNTEIEDGSIEQVAEHLMMIYEE

Q3KRG3 Pre-rRNA-processing protein TSR2 homolog

1.0e-04

27.91

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Query:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEE
        A+ +V   W  LQ+A++N +GG  S QK+  +   +  +F+ +   L  +++E+ + E +   F+T ++DGS+ QVA+ +  ++++
Subjt:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEE

Q3T090 Pre-rRNA-processing protein TSR2 homolog

5.6e-06

32.14

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Query:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIY
        A+ +    W  LQ+A+EN +GG  S +K+  L   V  +F ++   L ++++E+ L E ++  F+T +EDGS+ QV++ L  ++
Subjt:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIY

Q8C8T8 Pre-rRNA-processing protein TSR2 homolog

1.9e-06

33.33

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Query:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIY
        A+ +    W  LQ+A+EN +GG  S +K+  L   V  +F  +   L +E++E+ L E +   F+T +EDGS+ QV++ L  ++
Subjt:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIY

Q969E8 Pre-rRNA-processing protein TSR2 homolog

7.3e-06

32.53

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Query:  ISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIY
        + +    W  LQ+A+EN +GG  S +K+  L   V  +F ++   L ++++E+ L E L   F+T +EDGS+ QV++ L  ++
Subjt:  ISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIY

Arabidopsis top hits

e value

%identity

Alignment

AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region

1.2e-24

61.29

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Query:  SSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENL
        S LQ  I  + SRW GLQMA++N+WGG DS +KS  LA ++F   SQS   + VE++ENLLHE+LLLSFNTEIEDGSIE+VAE LM+++EE+L
Subjt:  SSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENL

AT5G27990.1 Pre-rRNA-processing protein TSR2, conserved region

9.1e-12

41.76

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Query:  LQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENL--LHETLLLSFNTEIEDGSIEQVAEHLMMIYEE
        L+  I  +  RW  ++ A+EN WGGRDS  K+    + VF +F QSK P  V+D+E L  L +  L   NT  EDGS+++VA  L+ +YE+
Subjt:  LQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENL--LHETLLLSFNTEIEDGSIEQVAEHLMMIYEE

Sequences

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CDS sequence

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mRNA sequence

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ATGGAGTCAATTGATGGATTAGCCTCAACCAATTACAAGGCGGGATCTCTCTCCAGCCTCCAAATGGCCATTTCGTCCGTGTTTTCTCGGTGGGACGGCCTTCAAATGGC
CATTGAAAATCGATGGGGAGGTCGCGACTCTCATCAGAAATCTCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACCTCCTTTATACGTGGAAGATC
TGGAAAATTTGCTCCATGAAACCCTGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAACACTTGATGATGATATACGAAGAAAATTTG
GTCCAGTACTTCGTCGGTCCATCAAAGGCGTCGAGCCTCCTTTTTCTTCCCGTTGTGCGGCGGAAAGAACCTTTTTCTCGATTTCCTATGCTTCGGCATTCGTTCTTGTG
CAGCATCTTCTCATTCCCGCGAAAAAATTCATCTGCTTAATCTCTCTACTTTCTCATTCTCTCTAGTTTCTCTACAACATTAAGAGACGACTACTGGACAGAGAAAACCC
TAAAGTTCTCTGGATGTCTTATTAAATTCTTCGAGCGAGGTGAGCTTTATTATCTTGTCGATCTTCGTTGATTAGTAAATTCTCTTTTTCAGAACTAGGGGCGGAAAATT
ATTTAGGGCCGGTTTGGTAGTTTCGTATTTCTCATCTCGTGTTTATCCTTTCATGATTTAGAAGAAAGAAAAAACAAAAAACGTGCTCGGTCATTATTTTTATTGTTCAA
GCTATCGGTTTGCTACCTTAAATACTGCAAACCAGTGATTTAGAGGCGCTTGTTATGTGTTATTAAGGAAATCAGCATCACCTGCAAGTTACTAATGAGCATTGACATCC
TAACTCATGTTATAATGAGCACCAATATCTTAAATAGATTAGAAATAATTCATGTTAAGTTAAATACGTATCCAG

Protein sequence

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MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENL
VQYFVGPSKASSLLFLPVVRRKEPFSRFPMLRHSFLCSIFSFPRKNSSA

Clc05G06410 (gene) of Watermelon (cordophanus) v2 genome