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Clc05G06485 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G06485
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr05:4761934..4762324
RNA-Seq ExpressionClc05G06485
SyntenyClc05G06485
Gene Ontology termsGO:0001172 - transcription, RNA-templated (biological process)
GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5587814.1 hypothetical protein H5410_048248 [Solanum commersonii]1.4e-2388.71Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP++
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
KAG6597448.1 hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sororia]5.7e-2598.21Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
        MGWLQSLFSPLKKLWFRLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
KGN56989.1 hypothetical protein Csa_010650 [Cucumis sativus]1.1e-28100Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
        MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
PHT38775.1 hypothetical protein CQW23_22348 [Capsicum baccatum]1.7e-2490.32Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP++
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
POO02187.1 hypothetical protein TorRG33x02_019710 [Trema orientale]2.4e-2393.33Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVESHT LP K
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
TrEMBL top hitse value%identityAlignment
A0A0A0L7K5 Uncharacterized protein5.4e-29100Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
        MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
A0A0V0GKY9 Putative ovule protein6.8e-2488.71Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP++
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
A0A2G2W0L8 Uncharacterized protein8.1e-2590.32Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP++
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
A0A2G2ZVG2 Uncharacterized protein8.1e-2590.32Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP++
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
M1CYA3 Uncharacterized protein6.8e-2488.71Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP++
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCCAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATC
TTGTCCTTGTGAAGATGTGCATGTGCTTTGGTCTATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCCAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATC
TTGTCCTTGTGAAGATGTGCATGTGCTTTGGTCTATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA
Protein sequenceShow/hide protein sequence
MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ