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Clc05G06670 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G06670
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr05:4881015..4881504
RNA-Seq ExpressionClc05G06670
SyntenyClc05G06670
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ29705.1 putative RNA-directed DNA polymerase [Rosa chinensis]4.4e-1060.42Show/hide
Query:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG
        MS FQ+ K  CDD+ +  ARFWWGSS  +RKIHWK W+FLC P+ E G
Subjt:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]1.7e-0946.97Show/hide
Query:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMGDLSNSSRTPGFQRMALFK
        MS+F++PK  C+++++ FARFWWGSS   +K+HW  WE +CLPK E+G L N     GF +  + K
Subjt:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMGDLSNSSRTPGFQRMALFK

XP_024163724.1 uncharacterized protein LOC112170610 [Rosa chinensis]7.5e-1062.5Show/hide
Query:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG
        MS+FQ+ K  C+D+    ARFWWGS++ KRKIHWK WE LCLPK E G
Subjt:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG

XP_024178647.1 uncharacterized protein LOC112184628 [Rosa chinensis]8.9e-1137.86Show/hide
Query:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG-------DLSNSS--------RTPGFQRMALFKPLKIIGEIDES-RVADFMS
        M++FQ+ KK+C+D+ +  ARFWWGS+  KRKIHWK W+FLC  K E G       + +N+           P    +  FKP  +   +D++ +V  F+S
Subjt:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG-------DLSNSS--------RTPGFQRMALFKPLKIIGEIDES-RVADFMS

Query:  ADG
        A G
Subjt:  ADG

XP_024190126.1 uncharacterized protein LOC112194101 [Rosa chinensis]1.3e-0950Show/hide
Query:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMGDLSNSSRTPGFQRMALFK
        MS F++PK +C++M +  ARFWWG SE  R+IHW  WE LC PKLE G         GF+ M  FK
Subjt:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMGDLSNSSRTPGFQRMALFK

TrEMBL top hitse value%identityAlignment
A0A2P6Q699 Putative RNA-directed DNA polymerase2.1e-1060.42Show/hide
Query:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG
        MS FQ+ K  CDD+ +  ARFWWGSS  +RKIHWK W+FLC P+ E G
Subjt:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG

A0A2P6QX62 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein5.3e-0960.42Show/hide
Query:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG
        MS+FQ+ K  CDD+ +  ARFWWGS   KRKIHWK W  LC PK E G
Subjt:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG

A0A6J1BRN0 uncharacterized protein LOC1110047878.1e-1046.97Show/hide
Query:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMGDLSNSSRTPGFQRMALFK
        MS+F++PK  C+++++ FARFWWGSS   +K+HW  WE +CLPK E+G L N     GF +  + K
Subjt:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMGDLSNSSRTPGFQRMALFK

Q10IA6 Retrotransposon protein, putative, unclassified6.9e-0954.17Show/hide
Query:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG
        MS+F+IPKK+CD ++ + ARFWWG  E  R+IHWK W  +C+PK   G
Subjt:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG

Q94H40 Putative reverse transcriptase6.9e-0954.17Show/hide
Query:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG
        MS+F+IPKK+CD ++ + ARFWWG  E  R+IHWK W  +C+PK   G
Subjt:  MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTTATTCCAAATTCCCAAGAAGCTTTGTGATGATATGACCAGAAGCTTCGCAAGATTTTGGTGGGGGTCCTCTGAAGTAAAAAGGAAGATTCACTGGAAAATATG
GGAGTTTCTCTGTTTGCCTAAGTTGGAAATGGGAGACTTGTCAAATTCTTCAAGGACCCCTGGATTCCAGAGGATGGCTCTTTTTAAACCTTTGAAAATTATTGGAGAAA
TAGACGAGAGCCGAGTGGCTGACTTCATGTCAGCAGATGGTTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTTATTCCAAATTCCCAAGAAGCTTTGTGATGATATGACCAGAAGCTTCGCAAGATTTTGGTGGGGGTCCTCTGAAGTAAAAAGGAAGATTCACTGGAAAATATG
GGAGTTTCTCTGTTTGCCTAAGTTGGAAATGGGAGACTTGTCAAATTCTTCAAGGACCCCTGGATTCCAGAGGATGGCTCTTTTTAAACCTTTGAAAATTATTGGAGAAA
TAGACGAGAGCCGAGTGGCTGACTTCATGTCAGCAGATGGTTGCTAG
Protein sequenceShow/hide protein sequence
MSLFQIPKKLCDDMTRSFARFWWGSSEVKRKIHWKIWEFLCLPKLEMGDLSNSSRTPGFQRMALFKPLKIIGEIDESRVADFMSADGC