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Clc05G07190 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G07190
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSerine/arginine-rich SC35-like splicing factor SCL28
Genome locationClcChr05:5317760..5323144
RNA-Seq ExpressionClc05G07190
SyntenyClc05G07190
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0007283 - spermatogenesis (biological process)
GO:0030154 - cell differentiation (biological process)
GO:0030261 - chromosome condensation (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049431.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo var. makuwa]7.7e-3090.59Show/hide
Query:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSYR
        +YSRSPSPARHDSRSRGARDEYLSPARSRSIS SRSPRDR+DYSRS +PK+NGRSPREVDNARSRSRSP+ DSRSPSGSRSRSYR
Subjt:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSYR

XP_004134179.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus]1.0e-2991.67Show/hide
Query:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY
        +YSRSPSPARHDSRSRGARDEYLSPARSRSIS SRSPRDRRDYSRS +PK+NGRSPREVDNARSRSRSP+ DSRSPSGSRSRSY
Subjt:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY

XP_008438778.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo]2.9e-2990.48Show/hide
Query:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY
        +YSRSPSPARHDSRSRGARDEYLSPARSRSIS SRSPRDR+DYSRS +PK+NGRSPREVDNARSRSRSP+ DSRSPSGSRSRSY
Subjt:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY

XP_022955785.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata]1.5e-2891.67Show/hide
Query:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY
        +YSRSPSPARHDSRSRGARDEYLSPARSRSISRS SPRDRRDYSRS +PKENGRSPR VD ARSRSRSPRA SRSPSGSRSRSY
Subjt:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY

XP_038878233.1 serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida]5.3e-3195.24Show/hide
Query:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY
        +YSRSPSPARHDSRSRGAR+EYLSPARSRSISRSRSPRDRRDYSRS +PKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY
Subjt:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY

TrEMBL top hitse value%identityAlignment
A0A0A0L7T3 Uncharacterized protein2.7e-3669.29Show/hide
Query:  FRVRDENNPLWRGTGAVAEVTALADVVEHHHAGGSAMTTTLETGTAKAGLTGTVAPLLLLGYSCAISPLMLGRKILGSRLSDLVLLRMCICRRTTTLGMA
        FRVR  NNPLW GTGA  EVTALA VVE HHA G  MTTTLETGTAKAGL GTVA LLLL YSC IS LMLGRKILGS LSDLVLLR CICRRTTTL   
Subjt:  FRVRDENNPLWRGTGAVAEVTALADVVEHHHAGGSAMTTTLETGTAKAGLTGTVAPLLLLGYSCAISPLMLGRKILGSRLSDLVLLRMCICRRTTTLGMA

Query:  AFVLTCAHLGVEETNLLFPVVEATEGVLQQGLQDGDIVVT
                           VVEATE VLQQGL+DG+IV+T
Subjt:  AFVLTCAHLGVEETNLLFPVVEATEGVLQQGLQDGDIVVT

A0A1S3AXW0 serine/arginine-rich SC35-like splicing factor SCL281.4e-2990.48Show/hide
Query:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY
        +YSRSPSPARHDSRSRGARDEYLSPARSRSIS SRSPRDR+DYSRS +PK+NGRSPREVDNARSRSRSP+ DSRSPSGSRSRSY
Subjt:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY

A0A5D3CXM8 Serine/arginine-rich SC35-like splicing factor SCL283.7e-3090.59Show/hide
Query:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSYR
        +YSRSPSPARHDSRSRGARDEYLSPARSRSIS SRSPRDR+DYSRS +PK+NGRSPREVDNARSRSRSP+ DSRSPSGSRSRSYR
Subjt:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSYR

A0A6J1GW11 serine/arginine-rich SC35-like splicing factor SCL287.1e-2991.67Show/hide
Query:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY
        +YSRSPSPARHDSRSRGARDEYLSPARSRSISRS SPRDRRDYSRS +PKENGRSPR VD ARSRSRSPRA SRSPSGSRSRSY
Subjt:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY

A0A6J1IQ05 serine/arginine-rich SC35-like splicing factor SCL281.6e-2891.67Show/hide
Query:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY
        +YSRSPSPARHDSRSRGARDEYLSPARSRSISRS SPRDRRDYSRS +PKENGRSPR VD ARSRSRSPRA SRSPSGSRSRSY
Subjt:  TYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRSLSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACCGATCATGGGTGGACGTTTAAATCTTGGAGCGGTTAGGGTTTTCACTGCTTCTATTTTTCGCGATTTACGTTTTGCAGCTACTTGGCACCGCTTCGGTTTCCG
AGTAAGAGACGAAAATAACCCACTATGGCGAGGTACCGGAGCCGTAGCAGAAGTTACAGCCCTCGCCGACGTAGTAGAACACCACCACGCGGGCGGAAGCGCTATGACGA
CGACCCTCGAGACCGGTACCGCGAAAGCAGGTCTCACAGGGACCGTCGCTCCCCTGCTCCTTCTGGGTTACTCGTGCGCAATCTCCCCCTTGATGCTAGGCCGGAAGATC
TTAGGATCCCGTTTGAGCGATTTGGTCCTGTTAAGGATGTGTATCTGCCGAAGAACTACTACACTGGGTATGGCCGCTTTCGTGTTAACTTGTGCGCACTTGGGTGTTGA
AGAAACCAATTTATTATTTCCTGTGGTAGAAGCTACAGAAGGCGTTCTCCAGCAAGGTCTCCAAGACGGCGATATCGTTGTCACTTACTCACGCTCACCTTCACCTGCCA
GGCATGACTCAAGGAGCCGTGGGGCAAGAGATGAGTATCTTTCTCCAGCACGATCGAGATCAATTTCACGTTCTCGTTCCCCTCGCGATAGGCGGGATTACAGCCGATCT
CTAAGTCCGAAGGAGAATGGTCGGAGCCCTCGTGAAGTGGACAATGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGATAGCCGCAGTCCTTCTGGATCTCGTTCACGATC
CTATAGGTATTTTACCTTTTGTGCTCCTTTACCTTTGAAGTTCCTTTTACTGTCCTCGCTGATAGAGTTTCGGGATCGTGTGGTGCTTCTGTTGCAGTCCTTGAGAATTG
GTAGTCTGCCTTCAGTTGTGGCCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTACCGATCATGGGTGGACGTTTAAATCTTGGAGCGGTTAGGGTTTTCACTGCTTCTATTTTTCGCGATTTACGTTTTGCAGCTACTTGGCACCGCTTCGGTTTCCG
AGTAAGAGACGAAAATAACCCACTATGGCGAGGTACCGGAGCCGTAGCAGAAGTTACAGCCCTCGCCGACGTAGTAGAACACCACCACGCGGGCGGAAGCGCTATGACGA
CGACCCTCGAGACCGGTACCGCGAAAGCAGGTCTCACAGGGACCGTCGCTCCCCTGCTCCTTCTGGGTTACTCGTGCGCAATCTCCCCCTTGATGCTAGGCCGGAAGATC
TTAGGATCCCGTTTGAGCGATTTGGTCCTGTTAAGGATGTGTATCTGCCGAAGAACTACTACACTGGGTATGGCCGCTTTCGTGTTAACTTGTGCGCACTTGGGTGTTGA
AGAAACCAATTTATTATTTCCTGTGGTAGAAGCTACAGAAGGCGTTCTCCAGCAAGGTCTCCAAGACGGCGATATCGTTGTCACTTACTCACGCTCACCTTCACCTGCCA
GGCATGACTCAAGGAGCCGTGGGGCAAGAGATGAGTATCTTTCTCCAGCACGATCGAGATCAATTTCACGTTCTCGTTCCCCTCGCGATAGGCGGGATTACAGCCGATCT
CTAAGTCCGAAGGAGAATGGTCGGAGCCCTCGTGAAGTGGACAATGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGATAGCCGCAGTCCTTCTGGATCTCGTTCACGATC
CTATAGGTATTTTACCTTTTGTGCTCCTTTACCTTTGAAGTTCCTTTTACTGTCCTCGCTGATAGAGTTTCGGGATCGTGTGGTGCTTCTGTTGCAGTCCTTGAGAATTG
GTAGTCTGCCTTCAGTTGTGGCCAGATGAACTATGCTATTCCATGCTTTGCAGTTTCTGTAAGGAATTTTATTTATATGTGAAAGTCGGGAGGCGAGACTTGAGTTATGG
GTTGAAGAACAATGAGTGTAATCTCGCAGTTTCTCAAGTAGTTAACTTCATATGAATGCATGCTGGTGCACTTCTACTTGACCTTTACTAGATTTAGGATTTTGGGCTCA
GTGGATTTCGTTTTTGTACTCTTGTATATGCCCAGTGGTTGTATTTTTAAACTTAGGATGCTCCAATCTTGACATCGATAGTCTTGTTTGTTTACTTTTTAGTTCTATTT
TGTTGTTTAGTAATCCTTTTTTC
Protein sequenceShow/hide protein sequence
MLPIMGGRLNLGAVRVFTASIFRDLRFAATWHRFGFRVRDENNPLWRGTGAVAEVTALADVVEHHHAGGSAMTTTLETGTAKAGLTGTVAPLLLLGYSCAISPLMLGRKI
LGSRLSDLVLLRMCICRRTTTLGMAAFVLTCAHLGVEETNLLFPVVEATEGVLQQGLQDGDIVVTYSRSPSPARHDSRSRGARDEYLSPARSRSISRSRSPRDRRDYSRS
LSPKENGRSPREVDNARSRSRSPRADSRSPSGSRSRSYRYFTFCAPLPLKFLLLSSLIEFRDRVVLLLQSLRIGSLPSVVAR