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Clc05G07620 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G07620
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S21
Genome locationClcChr05:5755354..5763078
RNA-Seq ExpressionClc05G07620
SyntenyClc05G07620
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0019722 - calcium-mediated signaling (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR008801 - Rapid ALkalinization Factor
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3456212.1 hypothetical protein FNV43_RR00862 [Rhamnella rubrinervis]1.7e-2863.2Show/hide
Query:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLA----AEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGA
        M SS+    L ICAI A +LAL+SS+A+DF  D Q   L   S C   SGSI EC +A     E E+ SE +RRILA +RRYISY A+RRN+VPCSRRGA
Subjt:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLA----AEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGA

Query:  SYYNCQAGAPANPYSRGCSAITRCR
        SYYNC+ GAPANPYSRGCSAITRCR
Subjt:  SYYNCQAGAPANPYSRGCSAITRCR

XP_022138185.1 protein RALF-like 33 [Momordica charantia]8.0e-3972.73Show/hide
Query:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAAEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYN
        M +S IHGFL++CAISASYL LSSSTAVDFTGDRQFL LPPES C    G IAEC L  +    + +  RILAT  RYISY A+RRN+VPCSRRGASYYN
Subjt:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAAEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYN

Query:  CQAGAPANPYSRGCSAITRCR
        C+ GAPANPYSRGCSAITRCR
Subjt:  CQAGAPANPYSRGCSAITRCR

XP_022138421.1 protein RALF-like 33 [Momordica charantia]5.2e-3061.72Show/hide
Query:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLA-------AEFEIPSEISRRILATTRRYISYSAMRRNSVPCSR
        M+ S +   L   AI A++L LSS+TA DF+GD + L++P +S C    GSIAEC LA        EFE+ SEI+RRILA T RYISY A++RNSVPCSR
Subjt:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLA-------AEFEIPSEISRRILATTRRYISYSAMRRNSVPCSR

Query:  RGASYYNCQAGAPANPYSRGCSAITRCR
        RGASYYNCQ GA ANPY+RGCSAITRCR
Subjt:  RGASYYNCQAGAPANPYSRGCSAITRCR

XP_028751592.1 protein RALF-like 33 [Prosopis alba]1.3e-2860Show/hide
Query:  SSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLA------AEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGA
        SS  +GF ++CAI A +++LSSST VDF GD +    P +S C    GSI EC L+      +EFE+ SE +RRILA  RRYISY A+RRN+VPCSRRGA
Subjt:  SSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLA------AEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGA

Query:  SYYNCQAGAPANPYSRGCSAITRCR
        SYYNC+ GA ANPY RGCS ITRCR
Subjt:  SYYNCQAGAPANPYSRGCSAITRCR

XP_034685116.1 protein RALF-like 33 [Vitis riparia]3.7e-2863.33Show/hide
Query:  NIHGFLIICAISASYLALSSSTAVDFTGDR---QFLHLPPESVCCSGSGSIAECQLAAEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNC
        N   F++ICAI A ++ L+SS AVDF+GD    Q   +P  S C    GSIAEC    EFE+ SEI+RRILA ++RYISY A+ RNSVPCSRRGASYYNC
Subjt:  NIHGFLIICAISASYLALSSSTAVDFTGDR---QFLHLPPESVCCSGSGSIAECQLAAEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNC

Query:  QAGAPANPYSRGCSAITRCR
        +AGA ANPY+RGCSAITRCR
Subjt:  QAGAPANPYSRGCSAITRCR

TrEMBL top hitse value%identityAlignment
A0A6J1C8R0 protein RALF-like 333.9e-3972.73Show/hide
Query:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAAEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYN
        M +S IHGFL++CAISASYL LSSSTAVDFTGDRQFL LPPES C    G IAEC L  +    + +  RILAT  RYISY A+RRN+VPCSRRGASYYN
Subjt:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAAEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYN

Query:  CQAGAPANPYSRGCSAITRCR
        C+ GAPANPYSRGCSAITRCR
Subjt:  CQAGAPANPYSRGCSAITRCR

A0A6J1C9N4 protein RALF-like 332.5e-3061.72Show/hide
Query:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLA-------AEFEIPSEISRRILATTRRYISYSAMRRNSVPCSR
        M+ S +   L   AI A++L LSS+TA DF+GD + L++P +S C    GSIAEC LA        EFE+ SEI+RRILA T RYISY A++RNSVPCSR
Subjt:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLA-------AEFEIPSEISRRILATTRRYISYSAMRRNSVPCSR

Query:  RGASYYNCQAGAPANPYSRGCSAITRCR
        RGASYYNCQ GA ANPY+RGCSAITRCR
Subjt:  RGASYYNCQAGAPANPYSRGCSAITRCR

A0A6J1EV64 protein RALF-like 333.1e-2858.46Show/hide
Query:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA---------EFEIPSEISRRILATTRRYISYSAMRRNSVPC
        M+ S +  FL   AI A++  LSS+ AVDF+G  + L +P ES C    GSIAEC LA          EFE+ SEI+RRILA++ RY+SY A++RNSVPC
Subjt:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA---------EFEIPSEISRRILATTRRYISYSAMRRNSVPC

Query:  SRRGASYYNCQAGAPANPYSRGCSAITRCR
        SRRGASYYNCQ GA ANPY RGC+AITRCR
Subjt:  SRRGASYYNCQAGAPANPYSRGCSAITRCR

A0A6J1KG89 protein RALF-like 331.8e-2858.46Show/hide
Query:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA---------EFEIPSEISRRILATTRRYISYSAMRRNSVPC
        M+ S +  FL   AI A++  LSS+  VDF+GD + L +P ES C    GSIAEC LA          EFE+ SEI+RRILA + RY+SY A++RNSVPC
Subjt:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA---------EFEIPSEISRRILATTRRYISYSAMRRNSVPC

Query:  SRRGASYYNCQAGAPANPYSRGCSAITRCR
        SRRGASYYNCQ GA ANPY RGC+AITRCR
Subjt:  SRRGASYYNCQAGAPANPYSRGCSAITRCR

A0A6J1KVY0 protein RALF-like 333.1e-2856.92Show/hide
Query:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA---------EFEIPSEISRRILATTRRYISYSAMRRNSVPC
        M  S +   +   A+ A++  +SS+TA+DF+GD + L  P +S C    GSI EC LA          EFE+ SEI+RRILATT RYISY A+RRN+VPC
Subjt:  MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA---------EFEIPSEISRRILATTRRYISYSAMRRNSVPC

Query:  SRRGASYYNCQAGAPANPYSRGCSAITRCR
        SRRGASYYNC+ GA ANPY+RGCSAITRCR
Subjt:  SRRGASYYNCQAGAPANPYSRGCSAITRCR

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S212.4e-2579.41Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        R+ SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADS LDRLWQK+K EV+QQ
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

Q3E902 40S ribosomal protein S21-21.1e-2785.07Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ
        R+ SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADSG+DRLWQKKKVE +Q
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ

Q41852 40S ribosomal protein S212.0e-2477.61Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ
        R+ SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS LDRLWQKKK E++Q
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ

Q8L9P8 Protein RALF-like 336.9e-2558.12Show/hide
Query:  LIICAISASYL--ALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA---EFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAG
        +II  ++  +L  A++S ++ DF        +P ES C   +G+IAEC L+    EFE+ SEI+RRILATT +YISY A+RRN+VPCSRRGASYYNC+ G
Subjt:  LIICAISASYL--ALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA---EFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAG

Query:  APANPYSRGCSAITRCR
        A ANPYSRGCSAITRCR
Subjt:  APANPYSRGCSAITRCR

Q9M337 40S ribosomal protein S21-15.1e-2883.82Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        R+ SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADSG+DRLWQKKKVE +QQ
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

Arabidopsis top hitse value%identityAlignment
AT3G16570.1 rapid alkalinization factor 232.4e-2552.59Show/hide
Query:  IHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA-----------------EFEIPSEISRRILATTRRYISYSAMRRNS
        I   L+I A+    +A+SS  + +F GD      PP    C   G+IAEC ++A                 EFE+ SEI+RRILA TRRYISY A+RRN+
Subjt:  IHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA-----------------EFEIPSEISRRILATTRRYISYSAMRRNS

Query:  VPCSRRGASYYNCQAGAPANPYSRGCSAITRCRFS
        +PCSRRGASYYNC+ GA ANPYSRGCSAITRCR S
Subjt:  VPCSRRGASYYNCQAGAPANPYSRGCSAITRCRFS

AT3G53890.1 Ribosomal protein S21e3.6e-2983.82Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        R+ SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADSG+DRLWQKKKVE +QQ
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

AT3G53890.2 Ribosomal protein S21e3.6e-2983.82Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        R+ SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADSG+DRLWQKKKVE +QQ
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

AT4G15800.1 ralf-like 334.9e-2658.12Show/hide
Query:  LIICAISASYL--ALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA---EFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAG
        +II  ++  +L  A++S ++ DF        +P ES C   +G+IAEC L+    EFE+ SEI+RRILATT +YISY A+RRN+VPCSRRGASYYNC+ G
Subjt:  LIICAISASYL--ALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAA---EFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAG

Query:  APANPYSRGCSAITRCR
        A ANPYSRGCSAITRCR
Subjt:  APANPYSRGCSAITRCR

AT5G27700.1 Ribosomal protein S21e8.0e-2985.07Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ
        R+ SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADSG+DRLWQKKKVE +Q
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCTCAAACATCCATGGCTTCCTCATTATCTGCGCAATCTCCGCCTCCTATCTGGCCCTCTCTTCATCCACCGCCGTCGATTTCACCGGAGACCGCCAGTTCCT
CCACCTTCCGCCGGAATCTGTTTGTTGTTCAGGATCGGGATCGATCGCCGAGTGCCAGTTGGCGGCGGAGTTCGAGATACCGTCGGAGATCAGCCGCCGGATTCTGGCGA
CTACGAGGCGTTATATTAGCTACAGTGCGATGCGGAGGAACTCGGTGCCGTGCTCCCGACGCGGCGCGTCTTATTACAATTGCCAGGCTGGAGCTCCGGCGAATCCTTAC
TCTCGTGGGTGCAGCGCCATTACTCGATGTAGGTTTTCTAGTTCTAAAGTATTAGTTGATACACTTCAAGATGCAGAACGAAGAGGCTCCGCAACGAACCGGCTGATTAC
TTCCAAGGACCATGCTTCTGTCCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACACCGGCCAATTTTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCCCAGG
GAGATGCTGACAGTGGACTGGATCGGCTCTGGCAGAAGAAGAAAGTCGAAGTGCGTCAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCTCAAACATCCATGGCTTCCTCATTATCTGCGCAATCTCCGCCTCCTATCTGGCCCTCTCTTCATCCACCGCCGTCGATTTCACCGGAGACCGCCAGTTCCT
CCACCTTCCGCCGGAATCTGTTTGTTGTTCAGGATCGGGATCGATCGCCGAGTGCCAGTTGGCGGCGGAGTTCGAGATACCGTCGGAGATCAGCCGCCGGATTCTGGCGA
CTACGAGGCGTTATATTAGCTACAGTGCGATGCGGAGGAACTCGGTGCCGTGCTCCCGACGCGGCGCGTCTTATTACAATTGCCAGGCTGGAGCTCCGGCGAATCCTTAC
TCTCGTGGGTGCAGCGCCATTACTCGATGTAGGTTTTCTAGTTCTAAAGTATTAGTTGATACACTTCAAGATGCAGAACGAAGAGGCTCCGCAACGAACCGGCTGATTAC
TTCCAAGGACCATGCTTCTGTCCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACACCGGCCAATTTTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCCCAGG
GAGATGCTGACAGTGGACTGGATCGGCTCTGGCAGAAGAAGAAAGTCGAAGTGCGTCAACAATAGATGATTGTGCTGTTCTGGTTCATCTCTATATCAAAGTTTAAAAGG
ATAGAGACACACTTAAAATTTTTTTTTGAACCACTCATAGTTAAGTAGTTTCTTTTGACAACTTAAACTCATTAGTTTCTTTAAATGCAAACTTAACTACGTCTGAGACA
GTACAAGCATTGATGTGGGTCAAAAGAGGGCCAAAACTAAGTTGAATGACATGTTGAATTTCATTTTCCATTAAAAATATTTACTAGAGAGATTCAATATGGCCATATGT
GAATGTGATGTTGATATGATAAGGATGCTTTTCGGGTTTTGATAGGTTGTCTGCTCTTGGCAAAGGATGAAAATATTAAAATATTAATGGTTATGAATTTAGAGATTTTT
GTACAGATGACTGTTTCATGACTATATTATGATTGATGGCCCACTTGTGCTTGAGTGGAGAAAAATAAGGATCTTGATGGATGACTATTGCGTTAGAGCTATGATAGTTG
AACTTATGAAGCAGTCACACGGTTGAATTATTGGGAAGACTTGTAATG
Protein sequenceShow/hide protein sequence
MQSSNIHGFLIICAISASYLALSSSTAVDFTGDRQFLHLPPESVCCSGSGSIAECQLAAEFEIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAGAPANPY
SRGCSAITRCRFSSSKVLVDTLQDAERRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ