; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G07635 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G07635
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationClcChr05:5766766..5767367
RNA-Seq ExpressionClc05G07635
SyntenyClc05G07635
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0035529 - NADH pyrophosphatase activity (molecular function)
GO:0047631 - ADP-ribose diphosphatase activity (molecular function)
GO:0051287 - NAD binding (molecular function)
InterPro domainsIPR010684 - RNA polymerase II transcription factor SIII, subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582214.1 hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia]3.4e-2848.92Show/hide
Query:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCG-GPSPINKK
        MHIEN SKG DLT VT+KLWK FYEKKFGE+  + V+ERMKH KESF+WKQ+YE KMK  E+KA +IE RYIQN + EK +K+SRQ+  C   PS     
Subjt:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCG-GPSPINKK

Query:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK
                        SK+L K K + +I +V S  +NK+  S+GG         TS+  KKA++E  Q I+ KNLIAF++  +QK
Subjt:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK

XP_022979565.1 uncharacterized protein LOC111479243 [Cucurbita maxima]1.9e-2647.85Show/hide
Query:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCG-GPSPINKK
        M IENSSKG DLT VT+KLWK FYE+KFG++  + V+E MKH KESFKWKQ+YE K+K  E+KA +IE RYIQN Q EKA+K+SRQ+  C   PS     
Subjt:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCG-GPSPINKK

Query:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK
                        SK+L KSK   +  +V S + N K+   GG         TS+  KKA++E LQ I+ KN+IAF++  +QK
Subjt:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK

XP_022979571.1 uncharacterized protein LOC111479252 [Cucurbita maxima]1.7e-2746.24Show/hide
Query:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCG-GPSPINKK
        MHIEN SKG DLT +T+KLWK FYE+KFG+++ + V++RMKH KESF+WKQ+YE K+K  E KA ++E RYI+N Q EKA+K+SRQ+  C   PS     
Subjt:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCG-GPSPINKK

Query:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK
                        SK+L K K   ++ +V S N+NK+    GG         TS+  KKA++E LQ I+ KNLIAF++  +QK
Subjt:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]1.9e-4761.62Show/hide
Query:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ
        MHIENSSKG DLT VTDKLWKNFYEKKFG+N+ D VI++MK+KKESFKWKQ+YEAKM++ EKKA +IE RY QN QKE A+K+SR+IIFC   S  N K+
Subjt:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ

Query:  RFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK
        R    + +  CNTTESKIL K  RE Q+ +V S          GGT KP   TK S+  KKAKREALQCI+ KN+IAF++  MQK
Subjt:  RFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK

XP_038885879.1 uncharacterized protein LOC120076185 [Benincasa hispida]2.8e-4660.54Show/hide
Query:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ
        +HIENSSKG DLT VTDKLWKNFY KKFG+N++D  IERMK+KKESFKWKQ+YEAKM++ EKKA +IE RY QN QKE A+K+SR+IIFC   S  N K+
Subjt:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ

Query:  RFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK
             + +  CNTTESKIL K  RE Q+ +V S          GGT KP   TK S+  KKAKREALQCI+ KN+IAF++  MQK
Subjt:  RFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK

TrEMBL top hitse value%identityAlignment
A0A0A0KJR8 Nudix hydrolase domain-containing protein7.6e-2651.75Show/hide
Query:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGG-PSPINKK
        +HIEN SKG DLT +T+KLWKNFYE+KFG+++ D V+     K E+FKW  +Y AKMK  E +AKKIE R IQ++QKEKA+K+SRQI+FCG   S ++ K
Subjt:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGG-PSPINKK

Query:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQS
             ++  F  NTT+S  L K+KRE+ + +V ST+ NK+  S
Subjt:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQS

A0A1S4E1U0 transcription elongation factor B polypeptide 3 isoform X29.6e-2148.41Show/hide
Query:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ
        MH+E SS+G DLT VTDKLWK FYE++FG+ +   VIERM+ K+ +F+W Q+YEAKM+  EK   K   R  Q++ KE A+K+SRQI  C    P + K+
Subjt:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ

Query:  RFKGKSTEFGCNTTESKILNKSKREV
         F G    +    T++KIL K+K EV
Subjt:  RFKGKSTEFGCNTTESKILNKSKREV

A0A5D3BGR1 Transcription elongation factor B polypeptide 3 isoform X29.6e-2148.41Show/hide
Query:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ
        MH+E SS+G DLT VTDKLWK FYE++FG+ +   VIERM+ K+ +F+W Q+YEAKM+  EK   K   R  Q++ KE A+K+SRQI  C    P + K+
Subjt:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ

Query:  RFKGKSTEFGCNTTESKILNKSKREV
         F G    +    T++KIL K+K EV
Subjt:  RFKGKSTEFGCNTTESKILNKSKREV

A0A6J1IR58 uncharacterized protein LOC1114792528.1e-2846.24Show/hide
Query:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCG-GPSPINKK
        MHIEN SKG DLT +T+KLWK FYE+KFG+++ + V++RMKH KESF+WKQ+YE K+K  E KA ++E RYI+N Q EKA+K+SRQ+  C   PS     
Subjt:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCG-GPSPINKK

Query:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK
                        SK+L K K   ++ +V S N+NK+    GG         TS+  KKA++E LQ I+ KNLIAF++  +QK
Subjt:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK

A0A6J1ITM2 uncharacterized protein LOC1114792439.0e-2747.85Show/hide
Query:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCG-GPSPINKK
        M IENSSKG DLT VT+KLWK FYE+KFG++  + V+E MKH KESFKWKQ+YE K+K  E+KA +IE RYIQN Q EKA+K+SRQ+  C   PS     
Subjt:  MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCG-GPSPINKK

Query:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK
                        SK+L KSK   +  +V S + N K+   GG         TS+  KKA++E LQ I+ KN+IAF++  +QK
Subjt:  QRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).2.4e-1131.71Show/hide
Query:  HIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMK-HKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ
        HIE+++  +DL+ +TDK WK FY+K +GE +   +IE ++ +K   FKW+ +YE K+ + ++K K++  R  + ++ E  +K+SRQ   C   +P +K+ 
Subjt:  HIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMK-HKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ

Query:  RFKGKSTEFGCNTTESKILNKSK
         +   ++ +     +S I+ K+K
Subjt:  RFKGKSTEFGCNTTESKILNKSK

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).2.4e-1131.71Show/hide
Query:  HIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMK-HKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ
        HIE+++  +DL+ +TDK WK FY+K +GE +   +IE ++ +K   FKW+ +YE K+ + ++K K++  R  + ++ E  +K+SRQ   C   +P +K+ 
Subjt:  HIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMK-HKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQ

Query:  RFKGKSTEFGCNTTESKILNKSK
         +   ++ +     +S I+ K+K
Subjt:  RFKGKSTEFGCNTTESKILNKSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATATAGAGAACTCTTCCAAAGGAAGCGATCTCACATCTGTGACTGACAAGTTGTGGAAAAACTTCTACGAAAAAAAGTTTGGAGAGAATAATTATGATTTTGTGAT
TGAGAGGATGAAACATAAGAAGGAATCATTTAAATGGAAGCAAGTGTATGAGGCAAAGATGAAAAGCAATGAAAAGAAGGCAAAGAAAATTGAGGTTCGATATATACAAA
ACCATCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTCCTTCTCCAATCAACAAGAAACAAAGATTTAAAGGAAAATCAACTGAGTTTGGA
TGCAATACCACCGAGAGCAAGATTTTGAATAAGTCGAAGAGAGAAGTACAAATTTATGAAGTTCCATCTACGAATGATAATAAGAAGAAACAAAGCTTTGGAGGAACAAT
CAAACCTAGACGAAATACTAAGACAAGCGAGACGTGGAAGAAGGCAAAGAGAGAAGCGTTGCAGTGTATAAAGATGAAGAACCTAATAGCTTTTCAAAAAAAATTGATGC
AAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATATAGAGAACTCTTCCAAAGGAAGCGATCTCACATCTGTGACTGACAAGTTGTGGAAAAACTTCTACGAAAAAAAGTTTGGAGAGAATAATTATGATTTTGTGAT
TGAGAGGATGAAACATAAGAAGGAATCATTTAAATGGAAGCAAGTGTATGAGGCAAAGATGAAAAGCAATGAAAAGAAGGCAAAGAAAATTGAGGTTCGATATATACAAA
ACCATCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTCCTTCTCCAATCAACAAGAAACAAAGATTTAAAGGAAAATCAACTGAGTTTGGA
TGCAATACCACCGAGAGCAAGATTTTGAATAAGTCGAAGAGAGAAGTACAAATTTATGAAGTTCCATCTACGAATGATAATAAGAAGAAACAAAGCTTTGGAGGAACAAT
CAAACCTAGACGAAATACTAAGACAAGCGAGACGTGGAAGAAGGCAAAGAGAGAAGCGTTGCAGTGTATAAAGATGAAGAACCTAATAGCTTTTCAAAAAAAATTGATGC
AAAAGTAG
Protein sequenceShow/hide protein sequence
MHIENSSKGSDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFG
CNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK