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Clc05G08110 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G08110
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed RNA polymerase subunit
Genome locationClcChr05:6165211..6167768
RNA-Seq ExpressionClc05G08110
SyntenyClc05G08110
Gene Ontology termsGO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter (biological process)
GO:0006283 - transcription-coupled nucleotide-excision repair (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006379 - mRNA cleavage (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON61921.1 DNA-directed RNA polymerase subunit/transcription factor [Parasponia andersonii]3.7e-4496.59Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKEDRD KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTK+VRCAQCNHGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

RYR12796.1 hypothetical protein Ahy_B04g070148 isoform B [Arachis hypogaea]2.2e-4493.33Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVH
        MSTMKFCRECNNILYPKEDR++KILLYACRNCDHQEVADNNCVYRNE+HH+VGERTQVLQDVAADPTLPRTKAVRC QCNHGEAVFFQV+
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVH

XP_008438942.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo]2.0e-45100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

XP_024019992.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis]2.2e-4496.59Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKEDRD+KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTK+VRCAQCNHGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

XP_030503042.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa]4.4e-4598.86Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

TrEMBL top hitse value%identityAlignment
A0A0A0L816 DNA-directed RNA polymerase subunit9.5e-46100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

A0A5A7U5C7 DNA-directed RNA polymerase subunit9.5e-46100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

A0A6J1CBU6 DNA-directed RNA polymerase subunit9.5e-46100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

A0A6J1FM50 DNA-directed RNA polymerase subunit9.5e-46100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

A0A6J1I879 DNA-directed RNA polymerase subunit9.5e-46100Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

SwissProt top hitse value%identityAlignment
P36954 DNA-directed RNA polymerase II subunit RPB92.0e-2962.07Show/hide
Query:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVH
        ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ H
Subjt:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVH

P60898 DNA-directed RNA polymerase II subunit RPB92.0e-2962.07Show/hide
Query:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVH
        ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ H
Subjt:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVH

Q32P73 DNA-directed RNA polymerase II subunit RPB92.0e-2962.07Show/hide
Query:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVH
        ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ H
Subjt:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVH

Q6NLH0 DNA-directed RNA polymerases II, IV and V subunit 9A8.0e-4284.09Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L DVA+DPTLPRTKAVRC++C H EAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

Q8L5V0 DNA-directed RNA polymerases II, IV and V subunit 9B2.8e-4284.09Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L DVA+DPTLPRTKAVRCA+C HGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

Arabidopsis top hitse value%identityAlignment
AT3G16980.1 RNA polymerases M/15 Kd subunit5.7e-4384.09Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L DVA+DPTLPRTKAVRC++C H EAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ

AT4G16265.1 RNA polymerases M/15 Kd subunit2.0e-4384.09Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ
        MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L DVA+DPTLPRTKAVRCA+C HGEAVFFQ
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGAAGT
TGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTG
TCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTCCACTTCCTTTTTCTTTTTTTCTTTTGGAAAGCCTTTCTTTGTTTGCAAGGCTTGTGCTTCTTT
TTCCCATATTGTCTCGTTTATCATCGTTAG
mRNA sequenceShow/hide mRNA sequence
TTTGGGCTACCAACCTTTGTTTTGGGCTATGGAATTGGAAGCCCATTTACAAGTTCTGCAGTTTCTCCCGCCATTGGAAGAAAAACTCTATCTCTTTCGCCTGATCGACG
TTTCTAGAACCGCAGCCGATTTGGGATCGTCTTCTTCTTTACACTCTACTCCACTCTTCTAAATCTCTCATTTTCTTTGATACACCCTTAGATTATCCGCCGATTCCTTC
TGATTCTAACCTGCTAAAACCCTAGGAGAAATTTTGATTTATCTTTATTCAGCTCGGGGTTTTCTGTTTTTCTACCTTCTGCAAGATGAGTACCATGAAGTTTTGCCGGG
AATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGAAGTTGCTGACAATAACTGCGTCTATAGG
AATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGG
AGAAGCTGTTTTCTTCCAGGTCCACTTCCTTTTTCTTTTTTTCTTTTGGAAAGCCTTTCTTTGTTTGCAAGGCTTGTGCTTCTTTTTCCCATATTGTCTCGTTTATCATC
GTTAGAGATTTTTAACACTCTTTATTCTTTTCAACTCCTAAATTAGTTGCTTCTGTTTTACATTCTACACCATCATCATCGTAATACGGCCGTGAATACAGATGAGGTTT
TCTTGAATGAGAAATCCGAATTGTTAGTTGCTTGTGTAATTGTGTTGGATATTTTGTCAAGCTTGCTTGGAGGTTATAAATTTAAAATTACATCATTTCATCATAGTTAC
TTTTATTTAAGCCCTGATGTCATTGCGTTCTGCCTGCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACCGATG
GAGAGATTAAATATCAAATACATGCCGAATATTTCCTTTGTGCAATCGAAGTTTTATTGGCACACTAATGTTTTAACCATCCTATGCTTGAAGACGTAATTTTTTGCATG
GGGTTACAATTGTACTGAATGTCTATTTGGGTCGATGAGTACCATTAAACTGTCCAACTTCTCAATTTCTCAATTGCTCAATTTAACTTCACAGAGGTGTACTGGAATAA
TGCTAACTTAAGTGATTTTAAAATACTTGTTTGTCATTTTT
Protein sequenceShow/hide protein sequence
MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVHFLFLFFFWKAFLCLQGLCFF
FPYCLVYHR