CuGenDBv2

Gene ID	Clc05G08430
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Protein Ycf2
Genome location	ClcChr05:6532601..6533116
RNA-Seq Expression	Clc05G08430
Synteny	Clc05G08430
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

YP_009420838.1 Ycf2 [Citrullus colocynthis]

4.9e-82

96.13

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Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

YP_009560879.1 Ycf2 [Trichosanthes kirilowii]

4.9e-82

96.13

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Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

YP_009752033.1 Ycf2 protein [Cionosicys macranthus]

4.9e-82

96.13

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Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

YP_009752286.1 Ycf2 protein [Trichosanthes baviensis]

4.9e-82

96.13

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Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

4.9e-82

96.13

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

2.4e-82

96.13

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

A0A410HFC5 Protein Ycf2

2.4e-82

96.13

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

A0A6H0ET42 Protein Ycf2

2.4e-82

96.13

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

A0A6M3RUH1 Protein Ycf2

2.4e-82

96.13

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

A0A7G9IT80 Protein Ycf2

2.4e-82

96.13

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

SwissProt top hits

e value

%identity

Alignment

B1A978 Protein Ycf2

2.5e-81

92.26

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSV QDLWSLP PDEKNGITSYG VENDSDLVHGLLEVEGAL+GSSRTEKDCSQFDNDRVTLLL  EPRNPL ++QNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Q09MB4 Protein Ycf2

1.5e-81

92.26

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSV QDLWSLP PDEKNGITS GLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+FDNDRVTLLL PEPRNPLD++Q GSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Q09WV7 Protein Ycf2

2.5e-81

91.61

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSV QDLWSLPE DEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEKDCSQFDNDR TLLL PEPRNPLD++QNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQY+SEFEEGEGEGVL+PQ+IEEDLFNHIVWAPRIWRPWGFLFDCIE PNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Q0ZIV6 Protein Ycf2

1.1e-81

92.26

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSV QDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEG GEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIER NE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Q68RU4 Protein Ycf2

3.9e-82

92.26

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSV QDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSI+DQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+ ESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.7e-77

87.74

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKK  ILLYLLSCSAGSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCSQFDNDRVTLL   EPR+PL ++Q+GSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRP GFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.7e-77

87.74

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKK  ILLYLLSCSAGSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCSQFDNDRVTLL   EPR+PL ++Q+GSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEGEGEGVL+PQQIEEDLFNHIVWAPRIWRP GFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGAAATTAATGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGAACCCGATGAAAAAAATGGGATCACTTCTTA
TGGACTCGTTGAAAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTATTGGGATCCTCTCGAACAGAAAAAGATTGCAGTCAATTTGATAATGATC
GAGTGACCTTGCTTCTTTGGCCCGAACCCAGAAATCCCTTAGATATAATACAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTCTTTATGAACAATACGAATCGGAG
TTTGAAGAAGGGGAAGGAGAAGGAGTCCTCAACCCACAACAGATAGAGGAGGATTTATTTAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATT
TGATTGTATCGAAAGGCCCAATGAATATCCCGAGCAACACTTCAAGTTCTCCTTGCTCAAGCCAACAAGATTTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESE
FEEGEGEGVLNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNEYPEQHFKFSLLKPTRF

Clc05G08430 (gene) of Watermelon (cordophanus) v2 genome