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Clc05G08620 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G08620
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSsrA-binding protein
Genome locationClcChr05:6690978..6691568
RNA-Seq ExpressionClc05G08620
SyntenyClc05G08620
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018537.1 putative GTP diphosphokinase CRSH, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.8e-1763.22Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEPLLL----PPLVMCLLNHGRLTSLLLPPSSPGMNPHDLKL
        MASWKKTIISPFRKACTIFNQ+PRDPKKS SDSEQEKRVDVRNLQGE +        ++  +L+    T+      +  MNPHDLKL
Subjt:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEPLLL----PPLVMCLLNHGRLTSLLLPPSSPGMNPHDLKL
XP_004147637.1 uncharacterized protein LOC101206709 [Cucumis sativus]1.6e-1697.92Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGE
        MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGE
Subjt:  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGE
XP_008439007.1 PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo]6.3e-18100Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
        MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
Subjt:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
XP_022138108.1 uncharacterized protein LOC111009357 [Momordica charantia]1.2e-1695.74Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
        MASWKKTIISPFRKACTIFNQ PRDPKKSHSDSEQEKRVDVR+LQGE
Subjt:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
XP_038898749.1 uncharacterized protein LOC120086267 [Benincasa hispida]5.4e-1797.87Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
        MASWKKTIISPFRKACTIFNQN RDPKKSHSDSEQEKRVDVRNLQGE
Subjt:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
TrEMBL top hitse value%identityAlignment
A0A0A0L5H1 Uncharacterized protein7.6e-1797.92Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGE
        MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGE
Subjt:  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGE
A0A1S3AXS6 uncharacterized protein LOC103483930 isoform X33.1e-18100Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
        MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
Subjt:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
A0A5A7U9W0 Uncharacterized protein3.1e-18100Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
        MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
Subjt:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
A0A6J1CC51 uncharacterized protein LOC1110093575.8e-1795.74Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
        MASWKKTIISPFRKACTIFNQ PRDPKKSHSDSEQEKRVDVR+LQGE
Subjt:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
A0A6J1IUX8 uncharacterized protein LOC1114795261.7e-1695.74Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
        MASWKKTIISPFRKACTIFNQ+PRDPKKS SDSEQEKRVDVRNLQGE
Subjt:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48330.1 unknown protein3.8e-0548.98Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDS--EQEKRVDVRNLQGE
        MASWKKTI +PF+KA T FNQ  +  + +++ +  E EKR  V+ LQG+
Subjt:  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDS--EQEKRVDVRNLQGE
AT3G17580.1 unknown protein7.0e-0751.85Show/hide
Query:  MASWKKTIISPFRKACTIFNQNPRDPKK-------SHSDSEQEKRVDVRNLQGE
        MASWKKTI +PF+KA T FNQ  + PKK       + +  E EKR+ V+ LQGE
Subjt:  MASWKKTIISPFRKACTIFNQNPRDPKK-------SHSDSEQEKRVDVRNLQGE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAA
GCGAGTGGATGTGAGGAATCTTCAAGGGGAGCCACTGCTACTGCCGCCACTTGTAATGTGTCTTCTTAACCACGGACGACTGACGTCGCTGCTGCTGCCGCCGTCGTCAC
CGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGCTTTTTATTACTCTTAAATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAA
GCGAGTGGATGTGAGGAATCTTCAAGGGGAGCCACTGCTACTGCCGCCACTTGTAATGTGTCTTCTTAACCACGGACGACTGACGTCGCTGCTGCTGCCGCCGTCGTCAC
CGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGCTTTTTATTACTCTTAAATCTTAA
Protein sequenceShow/hide protein sequence
MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEPLLLPPLVMCLLNHGRLTSLLLPPSSPGMNPHDLKLLIMVRFKLFITLKS