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Clc05G08740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G08740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMaturase
Genome locationClcChr05:6827687..6828525
RNA-Seq ExpressionClc05G08740
SyntenyClc05G08740
Gene Ontology termsGO:0000373 - Group II intron splicing (biological process)
GO:0007005 - mitochondrion organization (biological process)
GO:0009845 - seed germination (biological process)
GO:0032885 - regulation of polysaccharide biosynthetic process (biological process)
GO:0090615 - mitochondrial mRNA processing (biological process)
GO:1900864 - mitochondrial RNA modification (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QDA22834.1 maturase R [Monotropa hypopitys]8.2e-3698.67Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHFHSGRG HSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

XP_022970633.1 uncharacterized protein LOC111469563 [Cucurbita maxima]4.8e-3698.67Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISI KEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

YP_003587246.1 maturase, partial [Citrullus lanatus]9.7e-37100Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

YP_003587362.1 maturase [Cucurbita pepo]4.8e-3698.67Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISI KEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

YP_009913627.1 maturase [Luffa acutangula]9.7e-37100Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

TrEMBL top hitse value%identityAlignment
A0A0M5M254 MatR1.5e-3597.33Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHF SGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLI IFKEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

A0A6J1I4G9 uncharacterized protein LOC1114695632.3e-3698.67Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISI KEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

A0A7D6C8J7 Maturase4.7e-37100Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

D5I3B6 Maturase (Fragment)4.7e-37100Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

D5I3E8 Maturase2.3e-3698.67Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISI KEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

SwissProt top hitse value%identityAlignment
P05511 Uncharacterized 91 kDa protein in cob intron8.1e-1038.46Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK--SIIRLAAHTTHST
        ++E +R+VLE+IY+P F   SH F  GR  HSALR I   +    W++E DI+ CF +I   +LI++   +I D +   +IR A +  + T
Subjt:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK--SIIRLAAHTTHST

P0A3U0 Group II intron-encoded protein LtrA1.6e-1348.68Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        ++EA+R++LESIY+P F D SH F   R  H+AL+ IK E+G +RWF+E DI+ CF  ID   LI +   +I D K
Subjt:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

P0A3U1 Group II intron-encoded protein LtrA1.6e-1348.68Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        ++EA+R++LESIY+P F D SH F   R  H+AL+ IK E+G +RWF+E DI+ CF  ID   LI +   +I D K
Subjt:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

P38456 Uncharacterized mitochondrial protein ymf115.8e-0835.14Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDD
        ++E IR +LE++Y+P F   SH F  GR +H+ L++I+ ++  + WF+E +  + F+ ID+  LI + +  I D
Subjt:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDD

P38478 Uncharacterized mitochondrial protein ymf402.6e-0839.47Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        ++E +R +LE +++P F D+SH F   R  H+ALR+I+   GTS W +E DI+  F  ID H L     E + D +
Subjt:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK

Arabidopsis top hitse value%identityAlignment
AT1G74350.1 Intron maturase, type II family protein2.9e-0735.8Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPKSIIRL
        ++EAIR+VLE ++ P F   SH   SGRGR SAL+ I      S W     + K         L+S+ +E+++D    I L
Subjt:  MKEAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPKSIIRL

AT5G04050.1 RNA-directed DNA polymerase (reverse transcriptase)1.4e-0436.99Show/hide
Query:  EAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDI-RKCFHTIDRHRLISIFKEEIDD
        EAIRMVLE +YD  F   S+    G GRH+A+R +K      RW+      R+ F   +   L     E+I+D
Subjt:  EAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDI-RKCFHTIDRHRLISIFKEEIDD

AT5G04050.2 RNA-directed DNA polymerase (reverse transcriptase)1.4e-0436.99Show/hide
Query:  EAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDI-RKCFHTIDRHRLISIFKEEIDD
        EAIRMVLE +YD  F   S+    G GRH+A+R +K      RW+      R+ F   +   L     E+I+D
Subjt:  EAIRMVLESIYDPEFPDTSH-FHSGRGRHSALRRIKEEWGTSRWFLEFDI-RKCFHTIDRHRLISIFKEEIDD

ATMG00520.1 Intron maturase, type II family protein3.9e-3690.67Show/hide
Query:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK
        MKEAIRMVLESIYDPEFPDTSHF SG+G HS LRRIKEEWG SRWFLEFDIRKCFHTIDRHRLI I KEEIDDPK
Subjt:  MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAGGCGATCAGAATGGTACTCGAATCCATTTACGATCCCGAGTTTCCAGACACATCGCACTTCCACTCGGGTCGAGGCCGCCACTCGGCCCTAAGACGGATCAA
AGAAGAGTGGGGAACCTCTCGCTGGTTTTTGGAATTCGACATCAGGAAGTGTTTTCACACCATCGACCGACATCGACTCATCTCAATCTTTAAGGAAGAGATCGACGATC
CCAAGTCCATCATCCGTTTAGCTGCTCACACAACACACTCCACAGCAAAATGGAGTTGCAGAAAGGAAGAAGGGCGAAACTTGTCGAAGCATGATGCATGCGAAGAACTT
ACGGACGAAGCTGGAGAAGAAGGCGGCTATGCTAGTTGGTGCATCTTTGTCGGCTATGATCAGCAGAGGTTGAGGTGCATTGATCCGACTACAAAATCGTTGGTAAGGTT
GTCATGCGTTGGGGTCCCTATGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAGGCGATCAGAATGGTACTCGAATCCATTTACGATCCCGAGTTTCCAGACACATCGCACTTCCACTCGGGTCGAGGCCGCCACTCGGCCCTAAGACGGATCAA
AGAAGAGTGGGGAACCTCTCGCTGGTTTTTGGAATTCGACATCAGGAAGTGTTTTCACACCATCGACCGACATCGACTCATCTCAATCTTTAAGGAAGAGATCGACGATC
CCAAGTCCATCATCCGTTTAGCTGCTCACACAACACACTCCACAGCAAAATGGAGTTGCAGAAAGGAAGAAGGGCGAAACTTGTCGAAGCATGATGCATGCGAAGAACTT
ACGGACGAAGCTGGAGAAGAAGGCGGCTATGCTAGTTGGTGCATCTTTGTCGGCTATGATCAGCAGAGGTTGAGGTGCATTGATCCGACTACAAAATCGTTGGTAAGGTT
GTCATGCGTTGGGGTCCCTATGCGTTGA
Protein sequenceShow/hide protein sequence
MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISIFKEEIDDPKSIIRLAAHTTHSTAKWSCRKEEGRNLSKHDACEEL
TDEAGEEGGYASWCIFVGYDQQRLRCIDPTTKSLVRLSCVGVPMR