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Clc05G08835 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G08835
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein RALF-like 32
Genome locationClcChr05:6898549..6898890
RNA-Seq ExpressionClc05G08835
SyntenyClc05G08835
Gene Ontology termsNA
InterPro domainsIPR008801 - Rapid ALkalinization Factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582109.1 Protein RALF-like 1, partial [Cucurbita argyrosperma subsp. sororia]2.9e-3064.6Show/hide
Query:  MKGSFSHQSLGVVLGLLYLLIFSN-IVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANP
        M+GS SH SL +VLGLLYLLIF+N +VV+A+DSL SPCNGSIAECY+E E LMESEISRRFL  + K ++Y+ L K+K  C  G GKPY   C+  EANP
Subjt:  MKGSFSHQSLGVVLGLLYLLIFSN-IVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANP

Query:  YDRGCAGIYNRCR
        YDR C+G YNRC+
Subjt:  YDRGCAGIYNRCR

XP_004147646.3 protein RALF-like 32 [Cucumis sativus]1.4e-1650.45Show/hide
Query:  SHQSLGVVLGLLYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCN-KGAGKPYGK--NCKSSEANPYDR
        S Q+  ++L  L+L +F ++ ++   S T  CNGSIAEC  EEEMLMESEI+RRFLEQ+ K+IS   L KD P C+    G+PY +  +C    ANPY+R
Subjt:  SHQSLGVVLGLLYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCN-KGAGKPYGK--NCKSSEANPYDR

Query:  GCAGIYNRCRT
        GC+ IY RCR+
Subjt:  GCAGIYNRCRT

XP_022138044.1 protein RALF-like 32 [Momordica charantia]3.4e-2356.91Show/hide
Query:  MKGSF-------SHQSLGV-VLGLLYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGK--
        MKGSF       +H+ + V +L LL L  F+N+  +  +S+T PCNGSIAECY EEEMLMESEISRRFLEQ+ K+ISYD L KD+P C  G GKPY K  
Subjt:  MKGSF-------SHQSLGV-VLGLLYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGK--

Query:  NCKSSEANPYDRGCAGIYNRCRT
        +C    +NPYDRGC  IY RC++
Subjt:  NCKSSEANPYDRGCAGIYNRCRT

XP_022138047.1 protein RALF-like 32 [Momordica charantia]1.6e-1756Show/hide
Query:  LYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCN-KGAGKPYGK--NCKSSEANPYDRGCAGIYNRCRT
        L LL     + +   S  SPCNGSIAEC  E+EMLMESEISRRFLEQ+ K+IS   L KD+P C+  G G+PY K  +C    +NPYDRGC+ IY RCR+
Subjt:  LYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCN-KGAGKPYGK--NCKSSEANPYDRGCAGIYNRCRT

XP_022138261.1 protein RALF-like 32 [Momordica charantia]6.0e-2059.79Show/hide
Query:  LLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPY--GKNCKSSEANPYDRGCAGIYNRCRT
        LL F+N V I   S+T PCNGSI+ECY EEE L ESEISRRFLEQ+ K+ISYD   KD+P C  G GKPY   ++C    +NPYDRGC+ IY RC++
Subjt:  LLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPY--GKNCKSSEANPYDRGCAGIYNRCRT

TrEMBL top hitse value%identityAlignment
A0A1U7WNT9 protein RALF-like 32 isoform X12.6e-1651Show/hide
Query:  LLYLLIFSNIVVIAIDSLT--SPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCN-KGAGKPYGKNCKSSEANPYDRGCAGIYNRCR
        L+Y+      ++  I S+T  SPCNG+IAEC EE E+LMES+ISRRFLE++ K+IS   L +D+P CN  G G+PY ++C    +NPY+RGC+  Y RCR
Subjt:  LLYLLIFSNIVVIAIDSLT--SPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCN-KGAGKPYGKNCKSSEANPYDRGCAGIYNRCR

A0A314L8Z7 Protein ralf-like 321.5e-1651.04Show/hide
Query:  YLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCN-KGAGKPYGKNCKSSEANPYDRGCAGIYNRCR
        + L  S + +I   +  SPCNG+IAEC EE E+LMES+ISRRFLE++ K+IS   L +D+P CN  G G+PY ++C    +NPY+RGC+  Y RCR
Subjt:  YLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCN-KGAGKPYGKNCKSSEANPYDRGCAGIYNRCR

A0A6J1C8Z5 protein RALF-like 321.7e-2356.91Show/hide
Query:  MKGSF-------SHQSLGV-VLGLLYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGK--
        MKGSF       +H+ + V +L LL L  F+N+  +  +S+T PCNGSIAECY EEEMLMESEISRRFLEQ+ K+ISYD L KD+P C  G GKPY K  
Subjt:  MKGSF-------SHQSLGV-VLGLLYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGK--

Query:  NCKSSEANPYDRGCAGIYNRCRT
        +C    +NPYDRGC  IY RC++
Subjt:  NCKSSEANPYDRGCAGIYNRCRT

A0A6J1C986 protein RALF-like 322.9e-2059.79Show/hide
Query:  LLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPY--GKNCKSSEANPYDRGCAGIYNRCRT
        LL F+N V I   S+T PCNGSI+ECY EEE L ESEISRRFLEQ+ K+ISYD   KD+P C  G GKPY   ++C    +NPYDRGC+ IY RC++
Subjt:  LLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPY--GKNCKSSEANPYDRGCAGIYNRCRT

A0A6J1C9Y4 protein RALF-like 328.0e-1856Show/hide
Query:  LYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCN-KGAGKPYGK--NCKSSEANPYDRGCAGIYNRCRT
        L LL     + +   S  SPCNGSIAEC  E+EMLMESEISRRFLEQ+ K+IS   L KD+P C+  G G+PY K  +C    +NPYDRGC+ IY RCR+
Subjt:  LYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCN-KGAGKPYGK--NCKSSEANPYDRGCAGIYNRCRT

SwissProt top hitse value%identityAlignment
O23262 Protein RALF-like 326.5e-0940.7Show/hide
Query:  SLTSPCNGSIAEC-----YEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKG-AGKPYGKNCKSSEANPYDRGCAGIYNRC
        S +S CNGS+AEC      EE  ++MES  S+R  E++   +SY  L +++P C+ G  G+ Y   C    +NPY RGC+  Y RC
Subjt:  SLTSPCNGSIAEC-----YEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKG-AGKPYGKNCKSSEANPYDRGCAGIYNRC

Q2HIM9 Protein RALF-like 311.3e-0436.79Show/hide
Query:  VVLGLLYLLIFSNIVVIAIDSLTSPCNGSI------AECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANPYDRGCA
        V+  +L+LLI ++   I      SP NG I           E+E LM +EISRR L  + ++I Y+ L +D   C K     Y  +C+S +AN Y RGC 
Subjt:  VVLGLLYLLIFSNIVVIAIDSLTSPCNGSI------AECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANPYDRGCA

Query:  GIYNRC
         I  RC
Subjt:  GIYNRC

Q9LK37 Protein RALF-like 246.1e-0743.24Show/hide
Query:  NGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANPYDRGCAGIYNRC
        NG I E  EE E +M SEISRR +  + ++ISY+ L +D   C K     Y   C+S +AN Y+RGC+ +  RC
Subjt:  NGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANPYDRGCAGIYNRC

Q9MA62 Protein RALF-like 221.5e-1050.6Show/hide
Query:  SLTSPCNGSIAECY-EEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNC-KSSEANPYDRGCAGIYNRCR
        SL S C GSIAEC  EEEEM  +S+ISRR L QK K+ISY  + ++   C++     Y  NC + ++ANPY RGC+ I  RCR
Subjt:  SLTSPCNGSIAECY-EEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNC-KSSEANPYDRGCAGIYNRCR

Q9SRY3 Protein RALF-like 13.8e-0947.5Show/hide
Query:  SPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKS-SEANPYDRGCAGIYNRCRT
        S C+GSIAEC   EE  M+SEI+RR L   TK+ISY  L ++   C++     Y  NC++ ++ANPY RGC+ I  RCR+
Subjt:  SPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKS-SEANPYDRGCAGIYNRCRT

Arabidopsis top hitse value%identityAlignment
AT1G02900.1 rapid alkalinization factor 12.7e-1047.5Show/hide
Query:  SPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKS-SEANPYDRGCAGIYNRCRT
        S C+GSIAEC   EE  M+SEI+RR L   TK+ISY  L ++   C++     Y  NC++ ++ANPY RGC+ I  RCR+
Subjt:  SPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKS-SEANPYDRGCAGIYNRCRT

AT3G05490.1 ralf-like 221.1e-1150.6Show/hide
Query:  SLTSPCNGSIAECY-EEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNC-KSSEANPYDRGCAGIYNRCR
        SL S C GSIAEC  EEEEM  +S+ISRR L QK K+ISY  + ++   C++     Y  NC + ++ANPY RGC+ I  RCR
Subjt:  SLTSPCNGSIAECY-EEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNC-KSSEANPYDRGCAGIYNRCR

AT3G23805.1 ralf-like 244.3e-0843.24Show/hide
Query:  NGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANPYDRGCAGIYNRC
        NG I E  EE E +M SEISRR +  + ++ISY+ L +D   C K     Y   C+S +AN Y+RGC+ +  RC
Subjt:  NGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANPYDRGCAGIYNRC

AT4G13950.1 ralf-like 319.0e-0636.79Show/hide
Query:  VVLGLLYLLIFSNIVVIAIDSLTSPCNGSI------AECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANPYDRGCA
        V+  +L+LLI ++   I      SP NG I           E+E LM +EISRR L  + ++I Y+ L +D   C K     Y  +C+S +AN Y RGC 
Subjt:  VVLGLLYLLIFSNIVVIAIDSLTSPCNGSI------AECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANPYDRGCA

Query:  GIYNRC
         I  RC
Subjt:  GIYNRC

AT4G14010.1 ralf-like 324.6e-1040.7Show/hide
Query:  SLTSPCNGSIAEC-----YEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKG-AGKPYGKNCKSSEANPYDRGCAGIYNRC
        S +S CNGS+AEC      EE  ++MES  S+R  E++   +SY  L +++P C+ G  G+ Y   C    +NPY RGC+  Y RC
Subjt:  SLTSPCNGSIAEC-----YEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKG-AGKPYGKNCKSSEANPYDRGCAGIYNRC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAAGCTTTAGCCACCAAAGCCTCGGCGTTGTCCTCGGCCTTCTATATCTATTGATTTTTAGTAACATTGTCGTTATTGCCATTGATAGCTTGACGAGCCCCTG
TAATGGTTCGATTGCAGAGTGCTACGAAGAAGAAGAGATGTTAATGGAGTCAGAGATAAGTCGAAGGTTTCTCGAACAAAAGACCAAACACATATCGTATGATGTTTTGA
TTAAAGACAAACCGACTTGCAATAAAGGTGCAGGCAAACCTTACGGTAAAAATTGTAAGTCTTCTGAAGCTAATCCTTATGATAGAGGATGCGCTGGAATATATAATCGA
TGTAGGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAAGCTTTAGCCACCAAAGCCTCGGCGTTGTCCTCGGCCTTCTATATCTATTGATTTTTAGTAACATTGTCGTTATTGCCATTGATAGCTTGACGAGCCCCTG
TAATGGTTCGATTGCAGAGTGCTACGAAGAAGAAGAGATGTTAATGGAGTCAGAGATAAGTCGAAGGTTTCTCGAACAAAAGACCAAACACATATCGTATGATGTTTTGA
TTAAAGACAAACCGACTTGCAATAAAGGTGCAGGCAAACCTTACGGTAAAAATTGTAAGTCTTCTGAAGCTAATCCTTATGATAGAGGATGCGCTGGAATATATAATCGA
TGTAGGACTTAG
Protein sequenceShow/hide protein sequence
MKGSFSHQSLGVVLGLLYLLIFSNIVVIAIDSLTSPCNGSIAECYEEEEMLMESEISRRFLEQKTKHISYDVLIKDKPTCNKGAGKPYGKNCKSSEANPYDRGCAGIYNR
CRT