CuGenDBv2

Gene ID	Clc05G09140
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	ClcChr05:7284401..7285066
RNA-Seq Expression	Clc05G09140
Synteny	Clc05G09140
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

8.7e-55

48.66

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Query:  KLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYI
        +L++WK+A+I KGGRLTLI++ LSSLP Y LSVF+APSS YK+I+K   NFLWKGS    GSHL+ W  VT PKE GGLGI R++++N+ALL K +WRY 
Subjt:  KLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYI

Query:  KEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKEDSR
         E +SLWR LI  KY  KHP +IP     SSSKA W  I        S     L NG+    W   W+ +  L   +PR FAL++DK  ++ DVW  ++ 
Subjt:  KEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKEDSR

Query:  EWILTFRRPLLNHAKDLWNQISTN
        +W +TFRR L +     W +I  N
Subjt:  EWILTFRRPLLNHAKDLWNQISTN

TYJ99315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

4.0e-52

45.98

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Query:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW
        ++KKL++WK+A I KGGRLTLI++ LSSLP Y LSVF+APS   K+IEK+   FLWKG++   GSHL+ W  V+  KE GGLGI R+ ++N+ALL KW+W
Subjt:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW

Query:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE
        RY+ E ++LWR LI  KY  K P +IP     S+SKA W  I        S     L NG+    W   W+ + +L   +PR FAL +DK I+V D W  
Subjt:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE

Query:  DSREWILTFRRPLLNHAKDLWNQI
           +W + FRR L +  +  W +I
Subjt:  DSREWILTFRRPLLNHAKDLWNQI

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.6e-59

50.22

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Query:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW
        ++KKL +WK+A+I KGGRLTLI++ LSSLP Y LSVF+APSS YK+IEK+  NFLWKGS    GSHL+ W IVT PKE GGLGI R++++N+ALL KW+W
Subjt:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW

Query:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE
        RY  E +SLWR LI  KY  KHP ++P     SSSKA W     +I  F++     L NG+    W   W+ +  L   +PR FAL+MDK  ++ DVW  
Subjt:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE

Query:  DSREWILTFRRPLLNHAKDLWNQISTN
        ++ +W +TFRR L +     W +I  N
Subjt:  DSREWILTFRRPLLNHAKDLWNQISTN

TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.1e-57

49.34

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Query:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW
        ++KKL +WK+A+I KGGRLTLI++ LSSLP Y LSVF+A SS YK+IEK+  NFLWKGS    GSHL+ W IVT PKE GGLGI R++I+N+ALL KW+W
Subjt:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW

Query:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE
        RY  E +SLWR LI  KY  KHP ++P     SSSKA W     +I  F+      L NG+    W   W+ +  L+  + R FAL++DK  ++ DVW  
Subjt:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE

Query:  DSREWILTFRRPLLNHAKDLWNQISTN
        ++ +W +TFRR L +     W +I  N
Subjt:  DSREWILTFRRPLLNHAKDLWNQISTN

TYK05808.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.3e-55

48.46

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Query:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW
        ++KKL++WK+A+I KGGRLTLI++ LSSL  Y LSVF+AP S YK+IEK+  NFLWKGS    GSHL+ W IVT  KE GGLGI R+++ N+ALL KW+W
Subjt:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW

Query:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE
        RY  E +SLWR LI  KY  KHP +IP     SSSKA W     +I  F++     L N +    W   W+ +  L   +PR FAL++DK  ++ DVW  
Subjt:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE

Query:  DSREWILTFRRPLLNHAKDLWNQISTN
        ++ +W +TFRR L +     W  I  N
Subjt:  DSREWILTFRRPLLNHAKDLWNQISTN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein

4.2e-55

48.66

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Query:  KLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYI
        +L++WK+A+I KGGRLTLI++ LSSLP Y LSVF+APSS YK+I+K   NFLWKGS    GSHL+ W  VT PKE GGLGI R++++N+ALL K +WRY 
Subjt:  KLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYI

Query:  KEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKEDSR
         E +SLWR LI  KY  KHP +IP     SSSKA W  I        S     L NG+    W   W+ +  L   +PR FAL++DK  ++ DVW  ++ 
Subjt:  KEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKEDSR

Query:  EWILTFRRPLLNHAKDLWNQISTN
        +W +TFRR L +     W +I  N
Subjt:  EWILTFRRPLLNHAKDLWNQISTN

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein

1.3e-59

50.22

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Query:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW
        ++KKL +WK+A+I KGGRLTLI++ LSSLP Y LSVF+APSS YK+IEK+  NFLWKGS    GSHL+ W IVT PKE GGLGI R++++N+ALL KW+W
Subjt:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW

Query:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE
        RY  E +SLWR LI  KY  KHP ++P     SSSKA W     +I  F++     L NG+    W   W+ +  L   +PR FAL+MDK  ++ DVW  
Subjt:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE

Query:  DSREWILTFRRPLLNHAKDLWNQISTN
        ++ +W +TFRR L +     W +I  N
Subjt:  DSREWILTFRRPLLNHAKDLWNQISTN

A0A5D3BLV7 LINE-1 retrotransposable element ORF2 protein

1.9e-52

45.98

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Query:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW
        ++KKL++WK+A I KGGRLTLI++ LSSLP Y LSVF+APS   K+IEK+   FLWKG++   GSHL+ W  V+  KE GGLGI R+ ++N+ALL KW+W
Subjt:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW

Query:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE
        RY+ E ++LWR LI  KY  K P +IP     S+SKA W  I        S     L NG+    W   W+ + +L   +PR FAL +DK I+V D W  
Subjt:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE

Query:  DSREWILTFRRPLLNHAKDLWNQI
           +W + FRR L +  +  W +I
Subjt:  DSREWILTFRRPLLNHAKDLWNQI

A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein

5.3e-58

49.34

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Query:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW
        ++KKL +WK+A+I KGGRLTLI++ LSSLP Y LSVF+A SS YK+IEK+  NFLWKGS    GSHL+ W IVT PKE GGLGI R++I+N+ALL KW+W
Subjt:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW

Query:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE
        RY  E +SLWR LI  KY  KHP ++P     SSSKA W     +I  F+      L NG+    W   W+ +  L+  + R FAL++DK  ++ DVW  
Subjt:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE

Query:  DSREWILTFRRPLLNHAKDLWNQISTN
        ++ +W +TFRR L +     W +I  N
Subjt:  DSREWILTFRRPLLNHAKDLWNQISTN

A0A5D3C3M3 LINE-1 retrotransposable element ORF2 protein

1.1e-55

48.46

Show/hide

Query:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW
        ++KKL++WK+A+I KGGRLTLI++ LSSL  Y LSVF+AP S YK+IEK+  NFLWKGS    GSHL+ W IVT  KE GGLGI R+++ N+ALL KW+W
Subjt:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW

Query:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE
        RY  E +SLWR LI  KY  KHP +IP     SSSKA W     +I  F++     L N +    W   W+ +  L   +PR FAL++DK  ++ DVW  
Subjt:  RYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKE

Query:  DSREWILTFRRPLLNHAKDLWNQISTN
        ++ +W +TFRR L +     W  I  N
Subjt:  DSREWILTFRRPLLNHAKDLWNQISTN

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

6.1e-19

37.29

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Query:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW
        +  ++  W+   +   GRLTL +AVLSS+P + +S    P SI   ++++   FLW  +      HLV+W  V  PK+ GGLG+   K  N AL+ K  W
Subjt:  MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIW

Query:  RYIKEKDSLWRNLIDAKY
        R ++EK+SLW  ++  KY
Subjt:  RYIKEKDSLWRNLIDAKY

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

5.5e-15

27.12

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Query:  KLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIK---------ISNEAL
        ++  W   ++   GRL LI +V+ SL  +++S F+ PS+  K+I+ I  +FLW G +  +    V W  V  PK+ GGLGI  +K         IS    
Subjt:  KLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIK---------ISNEAL

Query:  LCKWIWRYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHISKFENMLRNGNNTMCWLHPWNSDEKLYQV
        L  W+W+ I +  +L    +      KH                          + NG+NT  W   W+   +L  V
Subjt:  LCKWIWRYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHISKFENMLRNGNNTMCWLHPWNSDEKLYQV

AT4G29090.1 Ribonuclease H-like superfamily protein

2.4e-18

28.65

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Query:  SLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSCK-HPENI
        +LPTY ++ F  P ++ K I  +L +F W+      G H   WD ++  K  GG+G   I+  N ALL K +WR +   +SL   +  ++Y  K  P N 
Subjt:  SLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSCK-HPENI

Query:  PDMCKYSSSKALWFHISKFENMLR--------NGNNTMCWLHPWNSDE------KLYQVFPRFFALAMDKLINVADVWKEDSREW
        P     S    +W  I   + +LR        NG + + W H W   +      ++ +V P+ +A ++  ++ V+D+  E  REW
Subjt:  PDMCKYSSSKALWFHISKFENMLR--------NGNNTMCWLHPWNSDE------KLYQVFPRFFALAMDKLINVADVWKEDSREW

Sequences

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CDS sequence

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ATGGAAAAAAAGCTTGACTCCTGGAAATTTGCATACATCTTTAAAGGAGGCAGACTTACACTAATACAAGCGGTGCTCTCTAGTCTTCCCACGTACTACCTATCTGTCTT
CAAAGCACCCAGCTCGATCTACAAAGACATTGAGAAGATATTGTGGAATTTTTTGTGGAAAGGCTCCGACAATTGTAGCGGCTCGCATCTTGTTAGATGGGACATTGTTA
CTCTCCCAAAAGAACATGGTGGACTTGGCATTGATAGAATTAAAATCTCCAATGAAGCCCTCCTTTGTAAGTGGATATGGAGATACATAAAGGAAAAGGACAGCCTTTGG
AGAAATCTTATCGACGCAAAATATAGCTGCAAACACCCCGAGAATATCCCTGATATGTGCAAATACAGTAGCTCAAAGGCCCTTTGGTTCCATATATCCAAATTTGAGAA
TATGCTCCGGAACGGAAACAACACCATGTGTTGGCTCCATCCTTGGAATTCAGATGAGAAATTATATCAGGTATTCCCCAGATTTTTCGCTCTTGCCATGGATAAATTGA
TCAATGTTGCAGATGTCTGGAAGGAGGATTCTCGCGAATGGATCTTGACTTTTCGAAGACCTCTGCTCAATCATGCGAAAGACTTATGGAACCAAATATCTACTAATTGG
ATGTAG

mRNA sequence

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Protein sequence

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MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLW
RNLIDAKYSCKHPENIPDMCKYSSSKALWFHISKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQISTNW
M

Clc05G09140 (gene) of Watermelon (cordophanus) v2 genome