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Clc05G09150 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G09150
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 reverse transcriptase like
Genome locationClcChr05:7285164..7286225
RNA-Seq ExpressionClc05G09150
SyntenyClc05G09150
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH79402.1 LINE-1 reverse transcriptase like [Trifolium medium]8.1e-0459.09Show/hide
Query:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQA
        ASVE+L  L  I++ FE ASGLKVN  KSC+ G+NV DD M+ A
Subjt:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQA

TrEMBL top hitse value%identityAlignment
A0A2Z6PCJ8 Reverse transcriptase domain-containing protein8.7e-0454.35Show/hide
Query:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQAED
        A+VE+L  L  I++ FE ASGLKVN  KSC+ G+NV DD +  A D
Subjt:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQAED

A0A392LWR3 LINE-1 reverse transcriptase like3.9e-0459.09Show/hide
Query:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQA
        ASVE+L  L  I++ FE ASGLKVN  KSC+ G+NV DD M+ A
Subjt:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQA

A0A392LYH2 LINE-1 reverse transcriptase like (Fragment)8.7e-0454.35Show/hide
Query:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQAED
        A+VE+L  L  +++ FE ASGLKVN  KSC+ GVNV  D M+ A D
Subjt:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQAED

A0A5D3BVB5 LINE-1 retrotransposable element ORF2 protein5.1e-0438.1Show/hide
Query:  IEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLRDL
        IEKAF+D+F +IY    +  W+I NL+W +I N     L  PFT++E+  A++ +   K   L
Subjt:  IEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLRDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAA
CGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCGAGACCTAACGGCTAGTGTCGAACATC
TCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAAGTTAATCTCCATAAATCTTGTATAGCTGGGGTCAATGTTGAAGATGATCTTATGCAA
CAAGCTGAAGACATATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAA
CGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCGAGACCTAACGGCTAGTGTCGAACATC
TCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAAGTTAATCTCCATAAATCTTGTATAGCTGGGGTCAATGTTGAAGATGATCTTATGCAA
CAAGCTGAAGACATATAG
Protein sequenceShow/hide protein sequence
MDQDIEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLRDLTASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQ
QAEDI