; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G09390 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G09390
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationClcChr05:7455836..7458936
RNA-Seq ExpressionClc05G09390
SyntenyClc05G09390
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038789 - Protein LOW PSII ACCUMULATION 2 like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067684.1 protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa]1.6e-9291.46Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII
        MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSSKP TSS QGFGSSSPQST+T+KS+PK+VKQKGKRQRASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_004148133.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]3.1e-8886.93Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII
        MALQILHHSPSSFT++PYHLPNPSLHF SKPKFIIKSQN SES+KPISK+VDD+ +A      TSSPQGFGSSSPQST+T+KS+PK++KQKGKRQRASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_008439106.1 PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]3.8e-9492.46Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII
        MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSSKPSTSSPQGFGSSSPQST+T+KS+PK+VKQKGKRQRASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_022973018.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]3.1e-8082.27Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAV----KQKGKRQR
        MALQI+HHSPSSFTRKPYHLP   L+FPSKPKFIIKSQ+ SESEKPISK VDD+++       TSS QGFGS S QSTT++KSSPKA     KQKGKRQR
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAV----KQKGKRQR

Query:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD
        ASIIRRSPVEKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD

Query:  EKS
        +KS
Subjt:  EKS

XP_038899637.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]5.9e-9594.97Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII
        MALQILHHSPSSFTRKPYHLPNPSL+FPSKPKFII SQN SESEKPISK VDD+ LATSSKPS+SSPQGFGSSS QSTTT+KSSPKAVKQKGKRQRASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

TrEMBL top hitse value%identityAlignment
A0A0A0L8E3 Uncharacterized protein1.5e-8886.93Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII
        MALQILHHSPSSFT++PYHLPNPSLHF SKPKFIIKSQN SES+KPISK+VDD+ +A      TSSPQGFGSSSPQST+T+KS+PK++KQKGKRQRASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic1.9e-9492.46Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII
        MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSSKPSTSSPQGFGSSSPQST+T+KS+PK+VKQKGKRQRASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 27.8e-9391.46Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII
        MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDD+ +ATSSKP TSS QGFGSSSPQST+T+KS+PK+VKQKGKRQRASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic2.6e-8082.76Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAV----KQKGKRQR
        MALQI+HHSPSSFTRKPYHLP   LHFPSK KFIIKSQN SESEKPISK VDD+ +       TSS QGFGS S QSTT++KSSPKA     KQKGKRQR
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAV----KQKGKRQR

Query:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD
        ASIIRRSPVEKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD

Query:  EKS
        +KS
Subjt:  EKS

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic1.5e-8082.27Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAV----KQKGKRQR
        MALQI+HHSPSSFTRKPYHLP   L+FPSKPKFIIKSQ+ SESEKPISK VDD+++       TSS QGFGS S QSTT++KSSPKA     KQKGKRQR
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAV----KQKGKRQR

Query:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD
        ASIIRRSPVEKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKD

Query:  EKS
        +KS
Subjt:  EKS

SwissProt top hitse value%identityAlignment
F4KDA6 Protein LPA24.6e-4253.03Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII
        MALQI  HSP SF+ +PYHL          P+F IK QNS           D +   + SK S+SS  GFGS +  S+   K S      K  + +  + 
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
        RR+PVEKPVF+ E     A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK

Arabidopsis top hitse value%identityAlignment
AT5G51545.1 low psii accumulation23.3e-4353.03Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII
        MALQI  HSP SF+ +PYHL          P+F IK QNS           D +   + SK S+SS  GFGS +  S+   K S      K  + +  + 
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
        RR+PVEKPVF+ E     A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATCAAATC
GCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCAT
CCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCATTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTT
GTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCT
TGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACCGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACG
GAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAA
mRNA sequenceShow/hide mRNA sequence
AATAAACTGTTCGTTTTTGTGTAGGGGGCGAGGGGGAATTTGGGAACTCGAGGGTTGACAACGTAAATATGAAAAGTTTATTAAGCGAAGGGAATAATATATTTCATAAC
TCTGAACTTCGCAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTC
CATTTCCCTTCTAAACCTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATTCTTCACTTGCGACTTCATCCAAGCC
ATCTACCTCATCCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAGTCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCAGAGGGCATCCA
TTATCCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGT
CTTGGCGCTGTGATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAAC
CGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAGAAATCATAATTTAATCCTTTTTGCTTGATGTTCT
GTATTTGATGTGAAGACCTGAAAAATCTCAAGTGCCTATAGATCTTGTTTATACAAAGTATCTCGTTTTACTGAGAAACTGAGGATGCAATTTTCTTTAGCTCAAAAGCA
AATGAGATGCTGTTGGTGGATTCTAGGAAACACCTTGCCATCGTTTTATTAGTTTCTTTGGGATTTAGTTTCAATGACAATGATCTTCTGAAAGATCCCTTCTGTTAATA
TCTTAGGATTGAGAATAACCTATTGTATAGATCCCTTATGTAATTCAAAGCCCACAAGCGAACTTCACTGGTGTTCCCTTCTATTATGGGGTTCGTTTTTTCTTTCTTTC
TTTTTATGGGAGATAAGGCATCTCCTCCCCTGGCCCTTCTAAACTGGAAGGCTCTAGGCCTTGGATTCGAGCAATGACTTGGAATGGAGATTCAACACCTAATAGCCCCG
ACATTTTCCGACTTGGCTATGCTATCTATTTGCTTAATTGCTTTTTAGAGGGAATATTATCCCCACAAGCGAACATGTTCTTTCAACATGCTCTTTTAACATGCTTTATT
CAAACTCACATGCTTTATAGAATAATTTTCAAGAGGTCACCCAACATAGAATTGTTCCA
Protein sequenceShow/hide protein sequence
MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDSSLATSSKPSTSSPQGFGSSSPQSTTTNKSSPKAVKQKGKRQRASIIRRSPVEKPVF
VGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS