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Clc05G09800 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G09800
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLysM domain-containing protein
Genome locationClcChr05:7913672..7914585
RNA-Seq ExpressionClc05G09800
SyntenyClc05G09800
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576752.1 hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia]3.4e-4276.67Show/hide
Query:  MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD--------RLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
        MP L   RT P SSR LIDVVSWYCAL LLGLILIGSIRETSSSS+S D         LL GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPD
Subjt:  MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD--------RLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD

Query:  DVFPGLVIKIIAAHKPSNFG
        DVFPGLVIKII++H P   G
Subjt:  DVFPGLVIKIIAAHKPSNFG

KGN57357.2 hypothetical protein Csa_009741 [Cucumis sativus]1.8e-3879.46Show/hide
Query:  MPRLSICRTR--PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
        MP +S+ R+R    SSR LIDVVSWYCA+GLLGLILIGSIRETSSS     RLLRG     RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDD
Subjt:  MPRLSICRTR--PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD

Query:  VFPGLVIKIIAA
        VFPGLVIKIIA+
Subjt:  VFPGLVIKIIAA

XP_004150301.1 uncharacterized protein LOC101210054 [Cucumis sativus]1.8e-3879.46Show/hide
Query:  MPRLSICRTR--PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
        MP +S+ R+R    SSR LIDVVSWYCA+GLLGLILIGSIRETSSS     RLLRG     RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDD
Subjt:  MPRLSICRTR--PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD

Query:  VFPGLVIKIIAA
        VFPGLVIKIIA+
Subjt:  VFPGLVIKIIAA

XP_008439155.1 PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]4.2e-4077.31Show/hide
Query:  MPRLSICRTR----PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
        MP +SI R+R      SSR LIDVVSWYCA+GLLGLILIGSIRETSSSS    R LRG     RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
Subjt:  MPRLSICRTR----PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP

Query:  DDVFPGLVIKIIAAHKPSN
        DDVFPGLVIKIIA+   +N
Subjt:  DDVFPGLVIKIIAAHKPSN

XP_022985106.1 uncharacterized protein LOC111483184 [Cucurbita maxima]1.7e-4174.79Show/hide
Query:  MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD-------RLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
        MP L   RT P SSR LIDVVSWYCA+ +LGLILIGSIRETSSS+S+ D        LL GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDD
Subjt:  MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD-------RLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD

Query:  VFPGLVIKIIAAHKPSNFG
        VFPGLVIKII++H P   G
Subjt:  VFPGLVIKIIAAHKPSNFG

TrEMBL top hitse value%identityAlignment
A0A0A0L5R9 LysM domain-containing protein8.5e-3979.46Show/hide
Query:  MPRLSICRTR--PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
        MP +S+ R+R    SSR LIDVVSWYCA+GLLGLILIGSIRETSSS     RLLRG     RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDD
Subjt:  MPRLSICRTR--PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD

Query:  VFPGLVIKIIAA
        VFPGLVIKIIA+
Subjt:  VFPGLVIKIIAA

A0A1S3AXP2 uncharacterized protein LOC1034840362.0e-4077.31Show/hide
Query:  MPRLSICRTR----PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
        MP +SI R+R      SSR LIDVVSWYCA+GLLGLILIGSIRETSSSS    R LRG     RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
Subjt:  MPRLSICRTR----PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP

Query:  DDVFPGLVIKIIAAHKPSN
        DDVFPGLVIKIIA+   +N
Subjt:  DDVFPGLVIKIIAAHKPSN

A0A5A7VAP9 Peptidoglycan-binding LysM domain-containing protein2.0e-4077.31Show/hide
Query:  MPRLSICRTR----PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
        MP +SI R+R      SSR LIDVVSWYCA+GLLGLILIGSIRETSSSS    R LRG     RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
Subjt:  MPRLSICRTR----PLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRG-----RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP

Query:  DDVFPGLVIKIIAAHKPSN
        DDVFPGLVIKIIA+   +N
Subjt:  DDVFPGLVIKIIAAHKPSN

A0A6J1DRZ3 uncharacterized protein LOC1110238413.2e-3875Show/hide
Query:  SSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD-------RLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAA
        SSR   DVVSWYCA+G+L LILIGSIRE++ S+ + D        L+RGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII++
Subjt:  SSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD-------RLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAA

Query:  HKPSNFGL
          PSN GL
Subjt:  HKPSNFGL

A0A6J1J769 uncharacterized protein LOC1114831848.2e-4274.79Show/hide
Query:  MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD-------RLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
        MP L   RT P SSR LIDVVSWYCA+ +LGLILIGSIRETSSS+S+ D        LL GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDD
Subjt:  MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGD-------RLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD

Query:  VFPGLVIKIIAAHKPSNFG
        VFPGLVIKII++H P   G
Subjt:  VFPGLVIKIIAAHKPSNFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein6.7e-2048.51Show/hide
Query:  SSRSLIDVVSWYCALGLLGLILIGSIRETSSSSS------SGDRLLRG----RP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIK
        SS ++ + +SWYCA+    ++L+ S +     S+          ++ G    RP CDEIY V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+
Subjt:  SSRSLIDVVSWYCALGLLGLILIGSIRETSSSSS------SGDRLLRG----RP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIK

Query:  I
        I
Subjt:  I

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein2.0e-2455.21Show/hide
Query:  DVVSWYCALGLLGLILIGSIRETSSSSSSGD------------RLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        + V+ YC + LL L L GS++  S+   SG+            + +  RPC+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Subjt:  DVVSWYCALGLLGLILIGSIRETSSSSSSGD------------RLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein2.3e-2866.67Show/hide
Query:  DVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        D+ +W  A+ LL LIL+ S+RE ++S+S        +PC+EIY+VGEGETLHTI DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Subjt:  DVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCGCCTCTCTATTTGCAGAACTAGGCCACTGTCTTCACGATCCCTAATCGACGTCGTTTCCTGGTACTGCGCCTTGGGCCTGTTGGGCCTCATCCTGATTGGGTC
CATCAGAGAAACTTCTTCCTCTTCCTCCTCCGGTGACCGGTTGCTGAGAGGGCGGCCGTGCGATGAGATTTATGTGGTCGGAGAAGGAGAAACACTTCATACCATTAGCG
ACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCGCCCATAAACCTTCCAAC
TTCGGATTAATCCAACCTGCTTAA
mRNA sequenceShow/hide mRNA sequence
GAGACAACTTGAAATCAGAAAGCAATCGAAAATGTAGAACCCAAGTGGTGGTGAGCTCAACGTCCAAAACCTCTTTTAACTTTTCTTCTCTCTCATTAACAAAACCACTT
TATAAATACCTACTTTTTAATTTCTCATCTCCATTTCATTTTGAACTCTCTCTAAAAAATTGGGTTCCACCACCATGCCCCGCCTCTCTATTTGCAGAACTAGGCCACTG
TCTTCACGATCCCTAATCGACGTCGTTTCCTGGTACTGCGCCTTGGGCCTGTTGGGCCTCATCCTGATTGGGTCCATCAGAGAAACTTCTTCCTCTTCCTCCTCCGGTGA
CCGGTTGCTGAGAGGGCGGCCGTGCGATGAGATTTATGTGGTCGGAGAAGGAGAAACACTTCATACCATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACC
CGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCGCCCATAAACCTTCCAACTTCGGATTAATCCAACCTGCTTAAATTTTTCTCCTT
TTCATTTTAATCCAAAATAATAATTCCACACCAATAATTTAAAAGCTTTAGCTTTTTTACAATTATAATTTCCATTTTCCCACACAGACATAGCTGTTGATATCCAGGTT
TGTTCTTCTTTTGTTTGTGTATTTTCTTTTTTAAGGATATATAGAGGTAAAATACAGCTCTTGCTCTTCTTCTCTTGTATGTATAAATATCATAATTAATATATATCTTA
AGAGAAAGAATGTCTATTTGTAATTTGTCTTTCTTTTTACTTTCAAATGTCGGATGAAAGCCATTTTAGCTTCCAACTTCAACTATGGTCTATCAACAGTACGTAACTCA
AACTTTTAAATTAAATATAATGTTGTGTTTTTTT
Protein sequenceShow/hide protein sequence
MPRLSICRTRPLSSRSLIDVVSWYCALGLLGLILIGSIRETSSSSSSGDRLLRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAAHKPSN
FGLIQPA