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Clc05G10180 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G10180
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTranscription factor LAF1-like isoform X2
Genome locationClcChr05:8197571..8198828
RNA-Seq ExpressionClc05G10180
SyntenyClc05G10180
Gene Ontology termsGO:0000494 - box C/D snoRNA 3'-end processing (biological process)
GO:0031167 - rRNA methylation (biological process)
GO:1990258 - histone glutamine methylation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031428 - box C/D snoRNP complex (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008649 - rRNA methyltransferase activity (molecular function)
GO:1990259 - histone-glutamine methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033637.1 transcription factor LAF1-like isoform X2 [Cucumis melo var. makuwa]3.4e-2377.92Show/hide
Query:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW
        MGSS +E+  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDLDFEG+IS+ FATCDELW
Subjt:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW

KGN57402.2 hypothetical protein Csa_009587 [Cucumis sativus]4.9e-2277.63Show/hide
Query:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEG-GRTSREGYGFEMLNWDLDFEGNISECFATCDEL
        MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG  RTSREGYGFEMLNWDLDFEG+IS+ FATCD+L
Subjt:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEG-GRTSREGYGFEMLNWDLDFEGNISECFATCDEL

XP_008439216.1 PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo]9.9e-2376.62Show/hide
Query:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW
        MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDLDFEG+IS+ FATCDELW
Subjt:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW

XP_008439218.1 PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo]9.9e-2376.62Show/hide
Query:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW
        MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDLDFEG+IS+ FATCDELW
Subjt:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW

XP_008439219.1 PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo]9.9e-2376.62Show/hide
Query:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW
        MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDLDFEG+IS+ FATCDELW
Subjt:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW

TrEMBL top hitse value%identityAlignment
A0A0A0L6I1 Uncharacterized protein2.5e-4874.5Show/hide
Query:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEG-GRTSREGYGFEMLNWDLDFEGNISECFATCDELWL-----KSRAVGVKGGSKEQGLE
        MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG  RTSREGYGFEMLNWDLDFEG+IS+ FATCD+L +      SRA G+KGGSK+QGLE
Subjt:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEG-GRTSREGYGFEMLNWDLDFEGNISECFATCDELWL-----KSRAVGVKGGSKEQGLE

Query:  KEGRFMRVSIMYLAVKPWAGQAKSSKVSSVALGGMVGLKVKSLEYWFRL
        KEGRFMRVSIM LA KP  GQAKS K  SVA GGMVGLKVKSLEY FR+
Subjt:  KEGRFMRVSIMYLAVKPWAGQAKSSKVSSVALGGMVGLKVKSLEYWFRL

A0A1S3AXV7 transcription factor LAF1-like isoform X24.8e-2376.62Show/hide
Query:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW
        MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDLDFEG+IS+ FATCDELW
Subjt:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW

A0A1S3AYA7 transcription factor LAF1-like isoform X34.8e-2376.62Show/hide
Query:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW
        MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDLDFEG+IS+ FATCDELW
Subjt:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW

A0A1S3AYW8 transcription factor LAF1-like isoform X14.8e-2376.62Show/hide
Query:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW
        MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDLDFEG+IS+ FATCDELW
Subjt:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW

A0A5D3DH52 Transcription factor LAF1-like isoform X21.6e-2377.92Show/hide
Query:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW
        MGSS +E+  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDLDFEG+IS+ FATCDELW
Subjt:  MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDLDFEGNISECFATCDELW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAG
CTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATG
AATTATGGCTTAAGTCGAGAGCGGTCGGGGTAAAAGGCGGAAGCAAGGAGCAAGGGCTCGAGAAGGAAGGTCGTTTTATGAGGGTATCCATCATGTACTTGGCGGTTAAG
CCTTGGGCAGGGCAAGCCAAATCCTCCAAGGTGAGTTCAGTAGCATTGGGTGGGATGGTTGGTTTGAAGGTTAAGAGTTTGGAGTATTGGTTTAGACTATGGAACATATA
G
mRNA sequenceShow/hide mRNA sequence
GCAGGGTTACTAAGAAACTCAAAGAGCTGCAGATTGAGATGGATTAATTACCTAAGGCCAGGGCTGAAAAGAGGAATGTTTAGCCAACAAGAAGAAGAGAAAATCTTGAC
CCTTCATCACTTGTTAGGCAACAAGTGGTCTAAGATAGCGCAGCATTTAGTAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTTG
TCTCGGGTTTGGAGGATTCTAAAAGTTGAGTTTTTTTGAATCGAGATCCGCCGTTGGAGGAGATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAG
GTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGA
GATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGCTTAAGTCGAGAGCGGTCGGGGTAAAAGGCGGAAGCAAGG
AGCAAGGGCTCGAGAAGGAAGGTCGTTTTATGAGGGTATCCATCATGTACTTGGCGGTTAAGCCTTGGGCAGGGCAAGCCAAATCCTCCAAGGTGAGTTCAGTAGCATTG
GGTGGGATGGTTGGTTTGAAGGTTAAGAGTTTGGAGTATTGGTTTAGACTATGGAACATATAGTCATACACCTTCTCCATGCTTAGTTGTTCTTCAGTGAACTTGCTTGC
TGTCTTCCCAATTGCCTGTGCCTAACATACAAGCCATTTAAGAAATACTATGGGAATATAAATGTACAAAATTGAAAATTTT
Protein sequenceShow/hide protein sequence
MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRTSREGYGFEMLNWDLDFEGNISECFATCDELWLKSRAVGVKGGSKEQGLEKEGRFMRVSIMYLAVK
PWAGQAKSSKVSSVALGGMVGLKVKSLEYWFRLWNI