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Clc05G10270 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G10270
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionZinc finger CCHC domain-containing protein 9
Genome locationClcChr05:8252100..8254483
RNA-Seq ExpressionClc05G10270
SyntenyClc05G10270
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576724.1 hypothetical protein SDJN03_24298, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2053.91Show/hide
Query:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKC-------------------------RDKQVTETRQR--------DDLEDDFMINEDHLQIKDA
        GTKFASCFICNESGHLSKNCPKNTHGIYPK      C                         R     E R+R        DDLEDDF I+EDHLQ+KDA
Subjt:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKC-------------------------RDKQVTETRQR--------DDLEDDFMINEDHLQIKDA

Query:  KMGKKMGPKVVRFMD
        K+ KK GPKVV+FMD
Subjt:  KMGKKMGPKVVRFMD

KAG7013235.1 hypothetical protein SDJN02_25993 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2152.14Show/hide
Query:  WGTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKC--------------------------RDKQVTETRQR--------DDLEDDFMINEDHLQIK
        WGT+FA+CFICNESGHLSKNCPKNTHGIYPK      C                          R     E  +R        DDLEDDFM+ ED+LQIK
Subjt:  WGTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKC--------------------------RDKQVTETRQR--------DDLEDDFMINEDHLQIK

Query:  DAKMGKKMGPKVVRFMD
        DAK+GKK GPKVV+FMD
Subjt:  DAKMGKKMGPKVVRFMD

TYK22955.1 zinc finger CCHC domain-containing protein 9 [Cucumis melo var. makuwa]1.4e-2155.17Show/hide
Query:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKCRD---------KQVTETRQR-------------------------DDLEDDFMINEDHLQIKD
        GTKFASCFICNESGHLSKNCPKNTHGIYPK      C +         K+ T+   R                         DDLEDDFMI+ED LQIKD
Subjt:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKCRD---------KQVTETRQR-------------------------DDLEDDFMINEDHLQIKD

Query:  AKMGKKMGPKVVRFMD
        AKMGKK GPKVV+FMD
Subjt:  AKMGKKMGPKVVRFMD

XP_022945772.1 uncharacterized protein LOC111449917 [Cucurbita moschata]1.2e-2052.59Show/hide
Query:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKC--------------------------RDKQVTETRQR--------DDLEDDFMINEDHLQIKD
        GTKFA+CFICNESGHLSKNCPKNTHGIYPK      C                          R     E  +R        DDLEDDFM+ ED+LQIKD
Subjt:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKC--------------------------RDKQVTETRQR--------DDLEDDFMINEDHLQIKD

Query:  AKMGKKMGPKVVRFMD
        AK+GKK GPKVV+FMD
Subjt:  AKMGKKMGPKVVRFMD

XP_031738808.1 zinc finger CCHC domain-containing protein 9 [Cucumis sativus]9.0e-2155.17Show/hide
Query:  GTKFASCFICNESGHLSKNCPKNTHGIYPK-----------HL---------------DMWKCRDKQVTETRQR--------DDLEDDFMINEDHLQIKD
        GTKFASCFICNESGHLSKNCPKNTHGIYPK           HL                ++  R     E  +R        DDLEDDFMI+E  LQIKD
Subjt:  GTKFASCFICNESGHLSKNCPKNTHGIYPK-----------HL---------------DMWKCRDKQVTETRQR--------DDLEDDFMINEDHLQIKD

Query:  AKMGKKMGPKVVRFMD
        AKMGKK GPKVV+FMD
Subjt:  AKMGKKMGPKVVRFMD

TrEMBL top hitse value%identityAlignment
A0A0A0L9S9 Uncharacterized protein4.3e-2155.17Show/hide
Query:  GTKFASCFICNESGHLSKNCPKNTHGIYPK-----------HL---------------DMWKCRDKQVTETRQR--------DDLEDDFMINEDHLQIKD
        GTKFASCFICNESGHLSKNCPKNTHGIYPK           HL                ++  R     E  +R        DDLEDDFMI+E  LQIKD
Subjt:  GTKFASCFICNESGHLSKNCPKNTHGIYPK-----------HL---------------DMWKCRDKQVTETRQR--------DDLEDDFMINEDHLQIKD

Query:  AKMGKKMGPKVVRFMD
        AKMGKK GPKVV+FMD
Subjt:  AKMGKKMGPKVVRFMD

A0A5D3DHA5 Zinc finger CCHC domain-containing protein 96.7e-2255.17Show/hide
Query:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKCRD---------KQVTETRQR-------------------------DDLEDDFMINEDHLQIKD
        GTKFASCFICNESGHLSKNCPKNTHGIYPK      C +         K+ T+   R                         DDLEDDFMI+ED LQIKD
Subjt:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKCRD---------KQVTETRQR-------------------------DDLEDDFMINEDHLQIKD

Query:  AKMGKKMGPKVVRFMD
        AKMGKK GPKVV+FMD
Subjt:  AKMGKKMGPKVVRFMD

A0A6J1CI48 uncharacterized protein LOC1110116011.3e-2050.86Show/hide
Query:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKCRD----------------------------------KQVTETRQRDDLEDDFMINEDHLQIKD
        GTKFA+CFICNESGHLSKNCPKNTHGIYPK      C +                                  +  T     DDLEDDFMI+EDHLQI D
Subjt:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKCRD----------------------------------KQVTETRQRDDLEDDFMINEDHLQIKD

Query:  AKMGKKMGPKVVRFMD
        AK GKK GPKVV+F+D
Subjt:  AKMGKKMGPKVVRFMD

A0A6J1G1V2 uncharacterized protein LOC1114499175.7e-2152.59Show/hide
Query:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKC--------------------------RDKQVTETRQR--------DDLEDDFMINEDHLQIKD
        GTKFA+CFICNESGHLSKNCPKNTHGIYPK      C                          R     E  +R        DDLEDDFM+ ED+LQIKD
Subjt:  GTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKC--------------------------RDKQVTETRQR--------DDLEDDFMINEDHLQIKD

Query:  AKMGKKMGPKVVRFMD
        AK+GKK GPKVV+FMD
Subjt:  AKMGKKMGPKVVRFMD

A0A6J1J3Y1 uncharacterized protein LOC1114831783.7e-2054.31Show/hide
Query:  GTKFASCFICNESGHLSKNCPKNTHGIYPK-----------HLDMWKCRDKQV---------------------TETRQ--RDDLEDDFMINEDHLQIKD
        GTKFASCFICNESGHLSKNCPKNTHGIYPK           HL    C +K                        ETR+   DDLEDDF I+EDHLQ+KD
Subjt:  GTKFASCFICNESGHLSKNCPKNTHGIYPK-----------HLDMWKCRDKQV---------------------TETRQ--RDDLEDDFMINEDHLQIKD

Query:  AKMGKKMGPKVVRFMD
        AK+ KK GP+VV+FMD
Subjt:  AKMGKKMGPKVVRFMD

SwissProt top hitse value%identityAlignment
Q8R1J3 Zinc finger CCHC domain-containing protein 93.2e-0534.78Show/hide
Query:  FASCFICNESGHLSKNCPKNTHGIYPK--------HLDMWK--CRDKQ-----VTETRQRDDLEDDFMINEDHLQIKDAKMGKKMGPKVVRF
        FA CF+C E GHLS++CP NT G+Y           ++ +K  CR+ Q     +T  R    +  D+   ED L +   +  K   PKVV F
Subjt:  FASCFICNESGHLSKNCPKNTHGIYPK--------HLDMWK--CRDKQ-----VTETRQRDDLEDDFMINEDHLQIKDAKMGKKMGPKVVRF

Q9HFF2 Uncharacterized protein C683.02c1.6e-0464.29Show/hide
Query:  KFASCFICNESGHLSKNCPKNTHGIYPK
        KFA CFIC+E+GHLS  C +N  G+YPK
Subjt:  KFASCFICNESGHLSKNCPKNTHGIYPK

Arabidopsis top hitse value%identityAlignment
AT5G52380.1 VASCULAR-RELATED NAC-DOMAIN 61.8e-1138.02Show/hide
Query:  GTKFASCFICNESGHLSKNCPKNTHGIYP-----------KHLDMWKCRDKQVTETRQ-------------------RDDLEDDFM----------INED
        GTKFASCFIC   GH+SKNCP+N HGIYP            HL +  C DK   E+ Q                    DDLEDDF            ++D
Subjt:  GTKFASCFICNESGHLSKNCPKNTHGIYP-----------KHLDMWKCRDKQVTETRQ-------------------RDDLEDDFM----------INED

Query:  HLQIKDAKMGKKMGPKVVRFM
          Q       KK GPK+V F+
Subjt:  HLQIKDAKMGKKMGPKVVRFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGGGAGATCTCTGTTATTTGGCATTCACAGATATGCTGCCTTTGCCGAAGACGAGGGGCACAGCCTCAAGAATTGCCCAGACAAAAATGAAGGAACTGTGGAT
AATAAGTTATGCTATAATTGTGGTGAAACAGGACATTCACTGGCTAATGTCCAGAACCCCTTCAAGATGGGGAACTAAGTTCGCCAGTTGTTTTATTTGTAATGAAAGCG
GACACTTAAGCAAGAATTGTCCGAAGAATACTCATGGGATCTATCCTAAGCATCTGGATATGTGGAAATGCCGAGACAAACAAGTGACCGAAACTCGTCAGCGTGATGAT
CTCGAGGATGACTTCATGATCAATGAAGATCATTTGCAAATCAAAGATGCAAAAATGGGAAAGAAAATGGGTCCTAAAGTTGTGAGGTTCATGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGGGAGATCTCTGTTATTTGGCATTCACAGATATGCTGCCTTTGCCGAAGACGAGGGGCACAGCCTCAAGAATTGCCCAGACAAAAATGAAGGAACTGTGGAT
AATAAGTTATGCTATAATTGTGGTGAAACAGGACATTCACTGGCTAATGTCCAGAACCCCTTCAAGATGGGGAACTAAGTTCGCCAGTTGTTTTATTTGTAATGAAAGCG
GACACTTAAGCAAGAATTGTCCGAAGAATACTCATGGGATCTATCCTAAGCATCTGGATATGTGGAAATGCCGAGACAAACAAGTGACCGAAACTCGTCAGCGTGATGAT
CTCGAGGATGACTTCATGATCAATGAAGATCATTTGCAAATCAAAGATGCAAAAATGGGAAAGAAAATGGGTCCTAAAGTTGTGAGGTTCATGGATTGA
Protein sequenceShow/hide protein sequence
MLKGDLCYLAFTDMLPLPKTRGTASRIAQTKMKELWIISYAIIVVKQDIHWLMSRTPSRWGTKFASCFICNESGHLSKNCPKNTHGIYPKHLDMWKCRDKQVTETRQRDD
LEDDFMINEDHLQIKDAKMGKKMGPKVVRFMD