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Clc05G10640 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G10640
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProlyl-tRNA synthetase
Genome locationClcChr05:8592149..8599632
RNA-Seq ExpressionClc05G10640
SyntenyClc05G10640
Gene Ontology termsGO:0006433 - prolyl-tRNA aminoacylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004827 - proline-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR004499 - Proline-tRNA ligase, class IIa, archaeal-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU23705.1 hypothetical protein TSUD_304800 [Trifolium subterraneum]4.3e-1034.69Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-----IFSSSL-----FAFVAINLKSNICKNFSGQCSFRFSAIR-MYLKERMGMTGVLPSS
        VSTRFVGGIIMTHGDD GLMLPPK+AP QV  +    KD     + +++L          I +K +     +    F F  ++ + L+  +G   V  +S
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-----IFSSSL-----FAFVAINLKSNICKNFSGQCSFRFSAIR-MYLKERMGMTGVLPSS

Query:  HFISFRG------------------------------SDILDQILKFSKAD-DLFKVFDLN--VCACF---TEQEAKTCLMTGNPAEEVAIFAKSY
          +S R                               S +L++ + F  +D D  KV +       CF     Q  K CLMTG+PAEEVAIFAKSY
Subjt:  HFISFRG------------------------------SDILDQILKFSKAD-DLFKVFDLN--VCACF---TEQEAKTCLMTGNPAEEVAIFAKSY

KAF3561428.1 hypothetical protein DY000_02016688 [Brassica cretica]4.3e-1035.82Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-----IFSSS------LFAFVAINLKSNI-CKNFSGQC------------------SFRFS
        VSTRFVGGIIMTHGDD GLMLPPK+AP QV  +    K+     + S++      L A   + ++  I  ++ S  C                  S   S
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-----IFSSS------LFAFVAINLKSNI-CKNFSGQC------------------SFRFS

Query:  AIRMYLKERMGMTGVLPSSHFISFRGSDILD----QILK------------FSKAD-DLFKVFDLN--VCACF---TEQEAKTCLMTGNPAEEVAIFAKS
         +  Y+KE++           +SFR S+I+D    + LK            +S +D D  +V +       CF     Q  KTCLMTGN AEE+AIFAKS
Subjt:  AIRMYLKERMGMTGVLPSSHFISFRGSDILD----QILK------------FSKAD-DLFKVFDLN--VCACF---TEQEAKTCLMTGNPAEEVAIFAKS

Query:  Y
        Y
Subjt:  Y

XP_004149956.3 proline--tRNA ligase, chloroplastic/mitochondrial [Cucumis sativus]3.3e-1033.48Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-------IFSSSLFAFV-AINLKSNICKNFSGQCSFRF-----------------------
        +STRFVGGIIMTHGDDGGLMLPPKLAP QV  +    KD         +SS+  F+    LK  + ++      ++F                       
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-------IFSSSLFAFV-AINLKSNICKNFSGQCSFRF-----------------------

Query:  ----------------------SAIRMYLKERMGMTGVLPSSHFISFRGSDILD----QILK------------FSKAD-DLFKVFDLN--VCACF---T
                              S +  Y+KER+            +FR S+I+D      LK            +S +D D  +V +       CF    
Subjt:  ----------------------SAIRMYLKERMGMTGVLPSSHFISFRGSDILD----QILK------------FSKAD-DLFKVFDLN--VCACF---T

Query:  EQEAKTCLMTGNPAEEVAIFAKSY
         Q  KTCLMTGNPAEEVAIFAKSY
Subjt:  EQEAKTCLMTGNPAEEVAIFAKSY

XP_028124669.1 proline--tRNA ligase, chloroplastic/mitochondrial isoform X2 [Camellia sinensis]3.5e-1235.53Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-----IFSSSLFAFVAIN---LKSNICKNFSGQCSFRFSAIRMY---LKERMGMTGVLPSS
        +STRF+GGIIMTHGDD GLMLPPK+AP QV  +    KD     + +++L     +N   +K  I         ++F+   M    L+  +G   VL  S
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-----IFSSSLFAFVAIN---LKSNICKNFSGQCSFRFSAIRMY---LKERMGMTGVLPSS

Query:  HFISFRG------------------------------SDILDQILKFSKAD-DLFKVFDLN--VCACF----TEQEAKTCLMTGNPAEEVAIFAKSY
          IS R                               S +L + + F  +D D  +V +       CF     E  +KTCLMTGNPAEEVAIFAKSY
Subjt:  HFISFRG------------------------------SDILDQILKFSKAD-DLFKVFDLN--VCACF----TEQEAKTCLMTGNPAEEVAIFAKSY

XP_029117431.1 proline--tRNA ligase, chloroplastic/mitochondrial isoform X2 [Elaeis guineensis]8.6e-1138.15Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLF--KDIFSSSLFAFVAINLKSNICKNFSGQCSFRFSAIRMYLKERMGMTGVLPSSHFISFRGSD
        VSTRF+GGIIMTHGDD GLMLPP++AP Q   L      +DI + S+      ++     K+F    S   S +  ++K R+           ISFR  +
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLF--KDIFSSSLFAFVAINLKSNICKNFSGQCSFRFSAIRMYLKERMGMTGVLPSSHFISFRGSD

Query:  ILD----QILK------------FSKAD-DLFKVFDLN--VCACFTEQE---AKTCLMTGNPAEEVAIFAKSY
        I+D    + LK            +S  D +  KV +       CF  ++    KTC MTGNPA+EVAIFAKSY
Subjt:  ILD----QILK------------FSKAD-DLFKVFDLN--VCACFTEQE---AKTCLMTGNPAEEVAIFAKSY

TrEMBL top hitse value%identityAlignment
A0A2Z6MKB8 Prolyl-tRNA synthetase2.1e-1034.69Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-----IFSSSL-----FAFVAINLKSNICKNFSGQCSFRFSAIR-MYLKERMGMTGVLPSS
        VSTRFVGGIIMTHGDD GLMLPPK+AP QV  +    KD     + +++L          I +K +     +    F F  ++ + L+  +G   V  +S
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-----IFSSSL-----FAFVAINLKSNICKNFSGQCSFRFSAIR-MYLKERMGMTGVLPSS

Query:  HFISFRG------------------------------SDILDQILKFSKAD-DLFKVFDLN--VCACF---TEQEAKTCLMTGNPAEEVAIFAKSY
          +S R                               S +L++ + F  +D D  KV +       CF     Q  K CLMTG+PAEEVAIFAKSY
Subjt:  HFISFRG------------------------------SDILDQILKFSKAD-DLFKVFDLN--VCACF---TEQEAKTCLMTGNPAEEVAIFAKSY

A0A3P6DMT7 Prolyl-tRNA synthetase4.6e-1031.7Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLFAFVA----------INLKSNICKNFSGQCSFRF---------------------
        VSTRFVGGIIMTHGDD GLMLPPK+AP QV  +    KD   + + +  +          + +K +     +    F F                     
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLFAFVA----------INLKSNICKNFSGQCSFRF---------------------

Query:  ----------------------SAIRMYLKERMGMTGVLPSSHFISFRGSDILD----QILK------------FSKAD-DLFKVFDLN--VCACFTEQE
                              S +  Y+KE++           ISFR S+I+D    + LK            +S +D D  +V +       CF  ++
Subjt:  ----------------------SAIRMYLKERMGMTGVLPSSHFISFRGSDILD----QILK------------FSKAD-DLFKVFDLN--VCACFTEQE

Query:  ---AKTCLMTGNPAEEVAIFAKSY
           +KTCLMTGNPAEEVAIFAKSY
Subjt:  ---AKTCLMTGNPAEEVAIFAKSY

A0A5N6RI68 Prolyl-tRNA synthetase2.7e-1033.04Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVG----W-----------LAFLFKDIFSSSLFAF---------------------VAINLKSNICKNFSGQ
        VSTRFVGGIIMTHGDD GLMLPP+LAP QV     W            A   KD+  ++ F                       V + ++       SG 
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVG----W-----------LAFLFKDIFSSSLFAF---------------------VAINLKSNICKNFSGQ

Query:  -----------------CSFRFSAIRMYLKERMGMTGVLPSSHFISFRGSDILD----QILKF-------------SKADDLFKVFDLN--VCACF---T
                          S   S +  Y+K+++G        H   FR S+I+D      LK              +  +D  KV +       CF    
Subjt:  -----------------CSFRFSAIRMYLKERMGMTGVLPSSHFISFRGSDILD----QILKF-------------SKADDLFKVFDLN--VCACF---T

Query:  EQEAKTCLMTGNPAEEVAIFAKSY
         Q  KTCLMTGNPAEEVAIFAKSY
Subjt:  EQEAKTCLMTGNPAEEVAIFAKSY

A0A6A4L2E9 Prolyl-tRNA synthetase (Fragment)6.0e-1032.44Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-----IFSSS-----LFAFVAINLKSNICKNFSGQCSFRF---------------------
        VSTRFVGGIIMTHGDD GLMLPPK+AP QV  +    KD     +F+++     +   V I +K +     +    F F                     
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD-----IFSSS-----LFAFVAINLKSNICKNFSGQCSFRF---------------------

Query:  ----------------------SAIRMYLKERMGMTGVLPSSHFISFRGSDILD----QILK------------FSKAD-DLFKVFDLN--VCACF----
                              S++  Y+KE++            SFR S+I+D      LK            +S +D D  +V +       CF    
Subjt:  ----------------------SAIRMYLKERMGMTGVLPSSHFISFRGSDILD----QILK------------FSKAD-DLFKVFDLN--VCACF----

Query:  TEQEAKTCLMTGNPAEEVAIFAKSY
         E   KTCLMTGNPAEE+AIFAKSY
Subjt:  TEQEAKTCLMTGNPAEEVAIFAKSY

V7C4B0 Prolyl-tRNA synthetase7.9e-1032.14Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVG----W-----------LAFLFKDIFSSS-------------------LFAFVAINLKSNI---------
        +STRFVGGIIMTHGDD GLMLPPKLAP QV     W            A   KD+   S                    +    + L+  I         
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVG----W-----------LAFLFKDIFSSS-------------------LFAFVAINLKSNI---------

Query:  ----CKNFSGQ------CSFRFSAIRMYLKERMGMTGVLPSSHFISFRGSDILDQIL-----------KFSKA------DDLFKVFDLN--VCACF---T
             ++  G+       S   S +  Y+K+++           I+FR S+I+D              K+++       +D  KV +       CF    
Subjt:  ----CKNFSGQ------CSFRFSAIRMYLKERMGMTGVLPSSHFISFRGSDILDQIL-----------KFSKA------DDLFKVFDLN--VCACF---T

Query:  EQEAKTCLMTGNPAEEVAIFAKSY
         Q  KTCLMTGNPAEEVAIFAKSY
Subjt:  EQEAKTCLMTGNPAEEVAIFAKSY

SwissProt top hitse value%identityAlignment
C4ZC24 Proline--tRNA ligase1.0e-0676.67Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQV
        VSTR +G IIM HGDD GL+LPPK+APTQV
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQV

Q0RBM4 Proline--tRNA ligase3.0e-0675.86Show/hide
Query:  STRFVGGIIMTHGDDGGLMLPPKLAPTQV
        STR VGG+IM HGDD GL +PP+LAPTQV
Subjt:  STRFVGGIIMTHGDDGGLMLPPKLAPTQV

Q2RZJ2 Proline--tRNA ligase7.9e-0764.1Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD
        VSTR +GG+IMTH DD GL+LPPKLAP QV  +   F D
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKD

Q9FYR6 Proline--tRNA ligase, chloroplastic/mitochondrial4.8e-1229.78Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLFAFVA----------INLKSNICKNFSGQCSFRF---------------------
        VSTRFVGGIIMTHGDD GLMLPPK+AP QV  +    KD   + + +  +          + +K +     +    F F                     
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLFAFVA----------INLKSNICKNFSGQCSFRF---------------------

Query:  ----------------------SAIRMYLKERMGMTGVLPSSHFISFRGSDILDQILKFSKADDL----------FKVFDLN----------VCACF---
                              S +  Y+KE++           +SFR S+I+D +  +++  D           +   D +             CF   
Subjt:  ----------------------SAIRMYLKERMGMTGVLPSSHFISFRGSDILDQILKFSKADDL----------FKVFDLN----------VCACF---

Query:  TEQEAKTCLMTGNPAEEVAIFAKSY
          Q  KTCLMTGNPAEEVAIFAKSY
Subjt:  TEQEAKTCLMTGNPAEEVAIFAKSY

Q9RUW4 Proline--tRNA ligase1.8e-0637.97Show/hide
Query:  AISFAIAHYLFKNIS----------QPKAKLFSCFRKIVSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIF
        A+    +HYL +N S          + K +        +S+R +G IIMTHGDD GLM+PP++AP QV  +    KD F
Subjt:  AISFAIAHYLFKNIS----------QPKAKLFSCFRKIVSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIF

Arabidopsis top hitse value%identityAlignment
AT3G62120.1 Class II aaRS and biotin synthetases superfamily protein8.9e-0648.89Show/hide
Query:  STRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLF
        STR +G +IMTHGDD GL+LPPK+A  QV  +   +KD  +  ++
Subjt:  STRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLF

AT3G62120.2 Class II aaRS and biotin synthetases superfamily protein8.9e-0648.89Show/hide
Query:  STRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLF
        STR +G +IMTHGDD GL+LPPK+A  QV  +   +KD  +  ++
Subjt:  STRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLF

AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein3.4e-1329.78Show/hide
Query:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLFAFVA----------INLKSNICKNFSGQCSFRF---------------------
        VSTRFVGGIIMTHGDD GLMLPPK+AP QV  +    KD   + + +  +          + +K +     +    F F                     
Subjt:  VSTRFVGGIIMTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLFAFVA----------INLKSNICKNFSGQCSFRF---------------------

Query:  ----------------------SAIRMYLKERMGMTGVLPSSHFISFRGSDILDQILKFSKADDL----------FKVFDLN----------VCACF---
                              S +  Y+KE++           +SFR S+I+D +  +++  D           +   D +             CF   
Subjt:  ----------------------SAIRMYLKERMGMTGVLPSSHFISFRGSDILDQILKFSKADDL----------FKVFDLN----------VCACF---

Query:  TEQEAKTCLMTGNPAEEVAIFAKSY
          Q  KTCLMTGNPAEEVAIFAKSY
Subjt:  TEQEAKTCLMTGNPAEEVAIFAKSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCATTCAATTAGTAATTGTTCAGGAGCAACACATGAAGCAGTATACTAATAGAAAAATAACATGGTTCTTGCTTTGTTGTTGTAGACAAGAACAATCTTTTTATCC
TCCTTATTTTTCTTTCGTAGAACATGACTTTGTGGGCAACATAATCCAAAGCCACAACCATAATACAAAAGTTAACAACAAAATCATCTTCACAGCTCCACCCATTGCCA
TTTCTTTTGCCATTGCCCACTACTTGTTTAAAAATATATCACAGCCTAAGGCAAAACTTTTCTCATGCTTTCGGAAAATAGTTAGTACGCGTTTTGTTGGAGGAATTATT
ATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGTTGGTTGGCTGGCATTTTTATTTAAGGATATATTTTCTTCCTCCCTCTTTGC
ATTTGTTGCTATTAACTTGAAATCAAATATATGCAAAAACTTTTCGGGACAGTGCAGTTTTAGATTCTCTGCAATTAGAATGTATTTGAAAGAAAGGATGGGAATGACTG
GTGTGCTTCCCAGTTCTCATTTCATCAGTTTCCGTGGTAGTGATATTCTTGATCAAATTTTGAAGTTTTCTAAAGCTGATGATTTGTTTAAAGTCTTTGATTTAAATGTT
TGCGCGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGATGACTGGTAACCCTGCTGAGGAAGTTGCCATTTTTGCGAAGTCTTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCATTCAATTAGTAATTGTTCAGGAGCAACACATGAAGCAGTATACTAATAGAAAAATAACATGGTTCTTGCTTTGTTGTTGTAGACAAGAACAATCTTTTTATCC
TCCTTATTTTTCTTTCGTAGAACATGACTTTGTGGGCAACATAATCCAAAGCCACAACCATAATACAAAAGTTAACAACAAAATCATCTTCACAGCTCCACCCATTGCCA
TTTCTTTTGCCATTGCCCACTACTTGTTTAAAAATATATCACAGCCTAAGGCAAAACTTTTCTCATGCTTTCGGAAAATAGTTAGTACGCGTTTTGTTGGAGGAATTATT
ATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGTTGGTTGGCTGGCATTTTTATTTAAGGATATATTTTCTTCCTCCCTCTTTGC
ATTTGTTGCTATTAACTTGAAATCAAATATATGCAAAAACTTTTCGGGACAGTGCAGTTTTAGATTCTCTGCAATTAGAATGTATTTGAAAGAAAGGATGGGAATGACTG
GTGTGCTTCCCAGTTCTCATTTCATCAGTTTCCGTGGTAGTGATATTCTTGATCAAATTTTGAAGTTTTCTAAAGCTGATGATTTGTTTAAAGTCTTTGATTTAAATGTT
TGCGCGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGATGACTGGTAACCCTGCTGAGGAAGTTGCCATTTTTGCGAAGTCTTACTGA
Protein sequenceShow/hide protein sequence
MLIQLVIVQEQHMKQYTNRKITWFLLCCCRQEQSFYPPYFSFVEHDFVGNIIQSHNHNTKVNNKIIFTAPPIAISFAIAHYLFKNISQPKAKLFSCFRKIVSTRFVGGII
MTHGDDGGLMLPPKLAPTQVGWLAFLFKDIFSSSLFAFVAINLKSNICKNFSGQCSFRFSAIRMYLKERMGMTGVLPSSHFISFRGSDILDQILKFSKADDLFKVFDLNV
CACFTEQEAKTCLMTGNPAEEVAIFAKSY