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Clc05G10860 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G10860
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Genome locationClcChr05:8750246..8755972
RNA-Seq ExpressionClc05G10860
SyntenyClc05G10860
Gene Ontology termsGO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008906 - HAT, C-terminal dimerisation domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051170.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]9.1e-2638.52Show/hide
Query:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQKS----------KRYASMSQSS--SCTTSTS
        F RSSPAR  KFKKCI+ E I+ KS +CLDV TRWNSTY+ML+AA KFEKAF+ L   +      +S  K             Y++    S   C+++++
Subjt:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQKS----------KRYASMSQSS--SCTTSTS

Query:  TSTSTAA--------TASEVFRLDF------EDMEDEDANGVD---TEVDIYLLEP--------------------------------AIPVSTVAYESA
        TST T +         ++E    DF      E+ ED+     +   +E+DIYLLE                                 AIPV TVA ESA
Subjt:  TSTSTAA--------TASEVFRLDF------EDMEDEDANGVD---TEVDIYLLEP--------------------------------AIPVSTVAYESA

Query:  FSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEEVEPPDGTSTCLADRRLDFP
        FST GRV+D  R +LA  TVEAL+C QNWL S  I +  Q  LE+    EE            DRRLD P
Subjt:  FSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEEVEPPDGTSTCLADRRLDFP

KAG5562489.1 hypothetical protein RHGRI_005274 [Rhododendron griersonianum]1.3e-2432.03Show/hide
Query:  FTIENVRRLIAEMIIIDELSFTFVENEGFK----------------------------------RSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNST
        F+ ++ +R +AEM+IIDEL   FVE  GF+                                  RSSP RL  FK+C+++E I S   +CLDV TRWNST
Subjt:  FTIENVRRLIAEMIIIDELSFTFVENEGFK----------------------------------RSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNST

Query:  YLMLDAAEKFEKAFESLSVINDGSTLSLSAQK------SKRYASMSQSSSCTTSTSTSTSTAATASE-----VFRLDFED-MEDEDANGVDTEVDIYLLE
        YLML+ A KFEKAF+ ++  + G  ++   +K       K Y + +         +++T +     +         +F+  +E E ++   +EVD YL +
Subjt:  YLMLDAAEKFEKAFESLSVINDGSTLSLSAQK------SKRYASMSQSSSCTTSTSTSTSTAATASE-----VFRLDFED-MEDEDANGVDTEVDIYLLE

Query:  ---------------------------------PAIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVE-EVE
                                          A+PVSTVA ESAFST GRV+DPFRS L+ + VE LVC QNWL S  + + L+  ++ + ++E E+ 
Subjt:  ---------------------------------PAIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVE-EVE

Query:  PPDGTS
          D +S
Subjt:  PPDGTS

XP_038877573.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Benincasa hispida]1.8e-2932.22Show/hide
Query:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQKS-----------------------------
        F RSSPARL  FKKCIKEENI SKSMLCLDV TRWNSTYLML+   KFEKAFE L    D  T+ ++ +K                              
Subjt:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQKS-----------------------------

Query:  ---------------------KRYASMS------------------------------------------------------------------------
                             K+Y+S +                                                                        
Subjt:  ---------------------KRYASMS------------------------------------------------------------------------

Query:  ---------------QSSSCTTSTSTSTSTAATASEVFRLDFEDMEDEDANGVDTEVDIYLLEP--------------------------------AIPV
                         SSCT  +S   +T+A+  ++F  DF+D++++D+  VD+EVDIYLLEP                                A+P+
Subjt:  ---------------QSSSCTTSTSTSTSTAATASEVFRLDFEDMEDEDANGVDTEVDIYLLEP--------------------------------AIPV

Query:  STVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEEV
        STVA+ESAF+T G+VIDPFR+ L+ T VEALVCAQN LRS+ IS+ L+ YLE+I + EEV
Subjt:  STVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEEV

XP_038890289.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Benincasa hispida]1.3e-2433.44Show/hide
Query:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLS-----VINDGST---------------LSLSAQKSKRYASMSQS
        F RSSP RLA FKKCIKEENI+SKSMLCLDV TRW+ST+ ML+AA KFEKAFE L       +N+                  LS+  + + R +     
Subjt:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLS-----VINDGST---------------LSLSAQKSKRYASMSQS

Query:  SSCTTSTSTST--------STAATASEV------------------------------------FRLDF-------------------------------
        +S T    TS         S+A   ++V                                    +++ F                               
Subjt:  SSCTTSTSTST--------STAATASEV------------------------------------FRLDF-------------------------------

Query:  ---------EDMEDEDANGVDTEVDIYLLEP--------------------------------AIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVC
                 +D++++D+  VD+EVDIYLLEP                                A+PVS VA ES F+T  RVIDPFR+ L+ TT+E+LVC
Subjt:  ---------EDMEDEDANGVDTEVDIYLLEP--------------------------------AIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVC

Query:  AQNWLRSKAISVDLQSYLEDIVNVEE
        AQNWLRS+ IS+ L+ YLE+I + EE
Subjt:  AQNWLRSKAISVDLQSYLEDIVNVEE

XP_038896681.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida]3.4e-2544.5Show/hide
Query:  KKFTIENVRRLIAEMIIIDELSFTFVENE-----------GFKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLS---
        K+++IE V  L  +   +++ +  +++              F R+SPARLA FKKCIKE NI SKSMLCLDV TRWNS YLML+AA KFEKAFE L    
Subjt:  KKFTIENVRRLIAEMIIIDELSFTFVENE-----------GFKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLS---

Query:  --VINDGSTLSLSAQKSK----------------RYASMSQSSSCTTSTSTSTSTAATASEVFRLDFEDMEDEDANGVDTEVDIYLLEPAI
           +N+   L  S   SK                  A+ SQ SSCT   S   +T+A+AS++FR DFED++++D   VD+EVDIYLLEP +
Subjt:  --VINDGSTLSLSAQKSK----------------RYASMSQSSSCTTSTSTSTSTAATASEVFRLDFEDMEDEDANGVDTEVDIYLLEPAI

TrEMBL top hitse value%identityAlignment
A0A2N9EV59 BED-type domain-containing protein1.5e-2642.71Show/hide
Query:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQKSKRYASMSQSSSCTTSTSTSTSTAATASEV
        + +SSP R  KF + +K+ NI SKS+L LDV TRWNSTYLML+AAEKFE+AF+ L +I+D           ++Y    +              +      
Subjt:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQKSKRYASMSQSSSCTTSTSTSTSTAATASEV

Query:  FRLDFEDME----DEDANGVDTEVDIYLLEP-----AIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEE
          L  E+ +     ED+    TEVD YL E      A+PVSTVA ES FST GRV+D FRS L+S TVEAL+C QNWLRS +  V L   ++++ +++E
Subjt:  FRLDFEDME----DEDANGVDTEVDIYLLEP-----AIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEE

A0A2N9HC36 BED-type domain-containing protein2.0e-2338.1Show/hide
Query:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQ---KSKRYASMSQSSSCTTS-TSTSTSTAAT
        + +SSP R  KF + +K+ NI SKS+L LDV TRWNSTYLML+AAEKFE+AF+ L +I+D   +    +     K+     +S     +    S S+A+ 
Subjt:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQ---KSKRYASMSQSSSCTTS-TSTSTSTAAT

Query:  ASEVFRLDFEDME----DEDANGVDTEVDIYLLEP---------------------------------AIPVSTVAYESAFSTSGRVIDPFRSMLASTTV
          + ++L  E+ +     ED     TEVD YL E                                  A+ VSTVA ESAFST GRV+D FRS L+  TV
Subjt:  ASEVFRLDFEDME----DEDANGVDTEVDIYLLEP---------------------------------AIPVSTVAYESAFSTSGRVIDPFRSMLASTTV

Query:  EALVCAQNWLRSKAISVDLQSYLEDIVNVEE
        EAL+C QNWLRS +  V L+  ++++ +++E
Subjt:  EALVCAQNWLRSKAISVDLQSYLEDIVNVEE

A0A5A7SRK8 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.1e-2438.87Show/hide
Query:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESL-----SVINDGSTLSLSAQKSKRYA------------------SM
        F RSSPAR  KFKKCI+ E I+ KS +CLDV  RWNSTY+ML+AA +FEKAF+ L     S I   +  S+  Q S+  A                  S 
Subjt:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESL-----SVINDGSTLSLSAQKSKRYA------------------SM

Query:  SQSSSCTTSTSTSTSTAATASEV-FRLDF----------------EDMEDEDANGVD---TEVDIYLLEP------------------------------
        +QS S    +STST++  T S +   +DF                E+ ED+     +   +E+DIYLLE                               
Subjt:  SQSSSCTTSTSTSTSTAATASEV-FRLDF----------------EDMEDEDANGVD---TEVDIYLLEP------------------------------

Query:  --AIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEE
          AIPVSTVA+ESAFST GRV+D  R  LA  TVEAL+C QNWL S  I +  Q  LE+    EE
Subjt:  --AIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEE

A0A5A7U7I9 Zinc finger BED domain-containing protein RICESLEEPER 3-like4.4e-2638.52Show/hide
Query:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQKS----------KRYASMSQSS--SCTTSTS
        F RSSPAR  KFKKCI+ E I+ KS +CLDV TRWNSTY+ML+AA KFEKAF+ L   +      +S  K             Y++    S   C+++++
Subjt:  FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQKS----------KRYASMSQSS--SCTTSTS

Query:  TSTSTAA--------TASEVFRLDF------EDMEDEDANGVD---TEVDIYLLEP--------------------------------AIPVSTVAYESA
        TST T +         ++E    DF      E+ ED+     +   +E+DIYLLE                                 AIPV TVA ESA
Subjt:  TSTSTAA--------TASEVFRLDF------EDMEDEDANGVD---TEVDIYLLEP--------------------------------AIPVSTVAYESA

Query:  FSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEEVEPPDGTSTCLADRRLDFP
        FST GRV+D  R +LA  TVEAL+C QNWL S  I +  Q  LE+    EE            DRRLD P
Subjt:  FSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEEVEPPDGTSTCLADRRLDFP

A0A7J0GUJ7 Uncharacterized protein5.4e-2433.94Show/hide
Query:  FTIENVRRLIAEMIIIDELSFTFVEN-------------EG----------------FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLD
        F+ +  +R +AEM++IDEL F  + N             EG                + RSSP RL  FKKC+++E +  K  +CLDV TRWNSTYLMLD
Subjt:  FTIENVRRLIAEMIIIDELSFTFVEN-------------EG----------------FKRSSPARLAKFKKCIKEENISSKSMLCLDVQTRWNSTYLMLD

Query:  AAEKFEKAFESLSVINDGSTLSLSAQKSKRYASMSQSS-----------------------SCTTSTSTSTSTAATASEVFRLDFEDMEDEDANGVDTEV
         AEKFEKAF+ ++  ++G        + + Y      +                       +C  STS          E    D       ++N      
Subjt:  AAEKFEKAFESLSVINDGSTLSLSAQKSKRYASMSQSS-----------------------SCTTSTSTSTSTAATASEVFRLDFEDMEDEDANGVDTEV

Query:  DIYLLEPAIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVE-EVEPPDG
         I L   A+PVSTVA ESAFST GR++DPFRS L+ + V+ LVC QNWL S  + ++L+  ++ + ++E E+   DG
Subjt:  DIYLLEPAIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVE-EVEPPDG

SwissProt top hitse value%identityAlignment
P03010 Putative AC9 transposase5.7e-0761.9Show/hide
Query:  AIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWL
        AI VSTVA ESAFS  GRV+DP+R+ L S  VEAL+C ++W+
Subjt:  AIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWL

P08770 Putative AC transposase5.7e-0761.9Show/hide
Query:  AIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWL
        AI VSTVA ESAFS  GRV+DP+R+ L S  VEAL+C ++W+
Subjt:  AIPVSTVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCAGAGCATGAGTTTGAGCTTGACCAATGACATTGACAATAGTAATAGCAATAGCAACAACAACAAGAGCAACAATTGTTCTAGTGTGAACGAAAATGATGATGT
TGTTGAGATGTCTCCATCGACACTTGAAGCGCAAGTTCGAAAAAAGAGGAAAAACACATCTATGTATAAGAAGTTTACTATTGAGAATGTTCGAAGACTAATTGCTGAGA
TGATCATAATTGATGAGTTGTCATTTACATTTGTGGAGAATGAGGGATTTAAGAGATCTTCTCCTGCTAGACTTGCTAAATTTAAGAAGTGCATCAAAGAGGAGAATATA
TCTAGTAAGAGTATGCTGTGTCTTGATGTTCAAACTAGATGGAATTCTACATACTTGATGCTTGATGCAGCAGAAAAGTTTGAAAAGGCATTTGAGAGTTTGTCAGTTAT
CAATGATGGTTCAACTTTAAGTTTATCAGCTCAGAAGTCCAAGAGATATGCAAGTATGAGTCAATCTTCAAGTTGTACTACTAGTACAAGTACAAGTACTAGTACTGCAG
CTACTGCTTCAGAGGTTTTTCGTTTGGATTTTGAAGATATGGAGGACGAGGATGCCAACGGTGTGGATACAGAAGTTGATATTTACTTATTGGAGCCTGCAATTCCAGTA
TCCACAGTTGCTTATGAGTCTGCATTCAGTACTAGTGGGAGAGTAATTGATCCTTTTCGTTCTATGTTAGCTTCAACCACAGTTGAGGCACTTGTGTGTGCACAAAATTG
GTTACGTTCGAAAGCAATTAGCGTTGATCTTCAAAGCTACTTGGAAGATATTGTAAATGTTGAAGAAGTGGAGCCACCAGACGGAACTAGCACTTGCTTAGCAGATCGCC
GACTCGATTTCCCCTTGTTCAGACAGTACAAAATTGACGGAAGGCGCTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCAGAGCATGAGTTTGAGCTTGACCAATGACATTGACAATAGTAATAGCAATAGCAACAACAACAAGAGCAACAATTGTTCTAGTGTGAACGAAAATGATGATGT
TGTTGAGATGTCTCCATCGACACTTGAAGCGCAAGTTCGAAAAAAGAGGAAAAACACATCTATGTATAAGAAGTTTACTATTGAGAATGTTCGAAGACTAATTGCTGAGA
TGATCATAATTGATGAGTTGTCATTTACATTTGTGGAGAATGAGGGATTTAAGAGATCTTCTCCTGCTAGACTTGCTAAATTTAAGAAGTGCATCAAAGAGGAGAATATA
TCTAGTAAGAGTATGCTGTGTCTTGATGTTCAAACTAGATGGAATTCTACATACTTGATGCTTGATGCAGCAGAAAAGTTTGAAAAGGCATTTGAGAGTTTGTCAGTTAT
CAATGATGGTTCAACTTTAAGTTTATCAGCTCAGAAGTCCAAGAGATATGCAAGTATGAGTCAATCTTCAAGTTGTACTACTAGTACAAGTACAAGTACTAGTACTGCAG
CTACTGCTTCAGAGGTTTTTCGTTTGGATTTTGAAGATATGGAGGACGAGGATGCCAACGGTGTGGATACAGAAGTTGATATTTACTTATTGGAGCCTGCAATTCCAGTA
TCCACAGTTGCTTATGAGTCTGCATTCAGTACTAGTGGGAGAGTAATTGATCCTTTTCGTTCTATGTTAGCTTCAACCACAGTTGAGGCACTTGTGTGTGCACAAAATTG
GTTACGTTCGAAAGCAATTAGCGTTGATCTTCAAAGCTACTTGGAAGATATTGTAAATGTTGAAGAAGTGGAGCCACCAGACGGAACTAGCACTTGCTTAGCAGATCGCC
GACTCGATTTCCCCTTGTTCAGACAGTACAAAATTGACGGAAGGCGCTGCTGA
Protein sequenceShow/hide protein sequence
MSQSMSLSLTNDIDNSNSNSNNNKSNNCSSVNENDDVVEMSPSTLEAQVRKKRKNTSMYKKFTIENVRRLIAEMIIIDELSFTFVENEGFKRSSPARLAKFKKCIKEENI
SSKSMLCLDVQTRWNSTYLMLDAAEKFEKAFESLSVINDGSTLSLSAQKSKRYASMSQSSSCTTSTSTSTSTAATASEVFRLDFEDMEDEDANGVDTEVDIYLLEPAIPV
STVAYESAFSTSGRVIDPFRSMLASTTVEALVCAQNWLRSKAISVDLQSYLEDIVNVEEVEPPDGTSTCLADRRLDFPLFRQYKIDGRRC