; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G11140 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G11140
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionArabinogalactan peptide 22
Genome locationClcChr05:8978393..8979196
RNA-Seq ExpressionClc05G11140
SyntenyClc05G11140
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK03143.1 arabinogalactan peptide 22 [Cucumis melo var. makuwa]2.2e-1785.51Show/hide
Query:  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRA CFGIYAAV++AVFYV++LP  VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

XP_008465391.1 PREDICTED: arabinogalactan peptide 22 [Cucumis melo]1.1e-1684.06Show/hide
Query:  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRA CFGIYAAV++AVFYV++L  +VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

XP_022140891.1 arabinogalactan peptide 22-like [Momordica charantia]9.3e-1679.41Show/hide
Query:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAV RACFGIYA +I A+ +V+ LP  VS AEHSSSPAPAP+SDGTTIDQGIAY+LMLLALVLTYIIH
Subjt:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

XP_022945187.1 arabinogalactan peptide 22-like [Cucurbita moschata]3.8e-1783.82Show/hide
Query:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRACFGIY AVI+A+FYVV LP  VS AEH+SSPAPAPTSDGT IDQGIAY+LMLLAL LTYIIH
Subjt:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

XP_038898060.1 arabinogalactan protein 41-like [Benincasa hispida]1.4e-1989.71Show/hide
Query:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVL+ACFGIYAAVI+AVFYVV+LP  VSAAE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

TrEMBL top hitse value%identityAlignment
A0A1S3CNS5 arabinogalactan peptide 225.3e-1784.06Show/hide
Query:  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRA CFGIYAAV++AVFYV++L  +VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

A0A5A7U3P4 Arabinogalactan peptide 225.3e-1784.06Show/hide
Query:  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRA CFGIYAAV++AVFYV++L  +VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

A0A5D3BTZ5 Arabinogalactan peptide 221.1e-1785.51Show/hide
Query:  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRA CFGIYAAV++AVFYV++LP  VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

A0A6J1CHE0 arabinogalactan peptide 22-like4.5e-1679.41Show/hide
Query:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAV RACFGIYA +I A+ +V+ LP  VS AEHSSSPAPAP+SDGTTIDQGIAY+LMLLALVLTYIIH
Subjt:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

A0A6J1G081 arabinogalactan peptide 22-like1.8e-1783.82Show/hide
Query:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRACFGIY AVI+A+FYVV LP  VS AEH+SSPAPAPTSDGT IDQGIAY+LMLLAL LTYIIH
Subjt:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 164.3e-0861.54Show/hide
Query:  AVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        A+F  V   +   A   S +PAPAPTSDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  AVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

Q8L9T8 Arabinogalactan protein 416.0e-1057.35Show/hide
Query:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        M+  R  FG+  + I+++ + + LP+A +    S++PAPAPTSDGTTIDQGIAYVLML+ALVLTY+IH
Subjt:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 221.1e-1168.52Show/hide
Query:  IMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        I+AVF ++S+ +   A  HSSSPAPAPTSDGT+IDQGIAYVLM++AL LTY IH
Subjt:  IMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

Q9M373 Arabinogalactan protein 204.3e-0854.39Show/hide
Query:  AAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        +  ++A+F  V   ++  A   S +PAP+PTSDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  AAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.1e-0961.54Show/hide
Query:  AVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        A+F  V   +   A   S +PAPAPTSDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  AVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

AT3G61640.1 arabinogalactan protein 203.1e-0954.39Show/hide
Query:  AAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        +  ++A+F  V   ++  A   S +PAP+PTSDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  AAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

AT5G24105.1 arabinogalactan protein 414.3e-1157.35Show/hide
Query:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        M+  R  FG+  + I+++ + + LP+A +    S++PAPAPTSDGTTIDQGIAYVLML+ALVLTY+IH
Subjt:  MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 227.8e-1368.52Show/hide
Query:  IMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        I+AVF ++S+ +   A  HSSSPAPAPTSDGT+IDQGIAYVLM++AL LTY IH
Subjt:  IMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGCTGTGATTATGGCTGTCTTTTATGTTGTTTCTTTGCCTGTGGCTGTATCTGCAGCTGAACATTCATCTTCTCC
AGCTCCAGCTCCCACTAGTGATGGAACCACAATAGACCAAGGAATAGCATATGTTCTAATGCTGTTGGCTTTAGTGCTCACTTATATCATCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGCTGTGATTATGGCTGTCTTTTATGTTGTTTCTTTGCCTGTGGCTGTATCTGCAGCTGAACATTCATCTTCTCC
AGCTCCAGCTCCCACTAGTGATGGAACCACAATAGACCAAGGAATAGCATATGTTCTAATGCTGTTGGCTTTAGTGCTCACTTATATCATCCATTGA
Protein sequenceShow/hide protein sequence
MAVLRACFGIYAAVIMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH