; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc05G11650 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G11650
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA-binding protein 2-like isoform X2
Genome locationClcChr05:9456673..9469451
RNA-Seq ExpressionClc05G11650
SyntenyClc05G11650
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR001810 - F-box domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146235.1 RNA-binding protein 2 isoform X2 [Cucumis sativus]1.7e-11495.77Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDT+GLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY
        G+GGVVSGANVNDRSTSFGGGRPN+PLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQGY
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY

Query:  KFDEFDRDSVNLR
        KFDEFDRDSVNLR
Subjt:  KFDEFDRDSVNLR

XP_008455996.1 PREDICTED: RNA-binding protein 2-like isoform X2 [Cucumis melo]2.0e-11597.18Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQGY
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY

Query:  KFDEFDRDSVNLR
        KFDEFDRDSVNLR
Subjt:  KFDEFDRDSVNLR

XP_022923072.1 RNA-binding protein 2-like isoform X2 [Cucurbita moschata]2.7e-11293.46Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIND-PPI
        MSDAYWRY+DSQQQPPSSVP+V GKRPRVDYDT+G H+LP+YYPRQDDRP+LQGIKSVDSINESYERYLRSS+ISSYGGQSARPVGGGVPGHSIND PPI
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIND-PPI

Query:  LGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG
        +GIGGVVSGANVNDRS SFGGGRPN+PLPPDASNTLFVEGLPSSCTRRE+AHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG
Subjt:  LGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG

Query:  YKFDEFDRDSVNLR
        YKFDEFDRDSVNLR
Subjt:  YKFDEFDRDSVNLR

XP_023553422.1 RNA-binding protein 2-like isoform X2 [Cucurbita pepo subsp. pepo]1.6e-11293.46Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIND-PPI
        MSDAYWRY+DSQQQPPSSVP+V GKRPRVDYDT+G H+LPNYYPRQDDRP+LQGIKSVDSINESYERYLRS++ISSYGGQSARPVGGGVPGHSIND PPI
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIND-PPI

Query:  LGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG
        +GIGGVVSGANVNDRS SFGGGRPN+PLPPDASNTLFVEGLPSSCTRRE+AHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG
Subjt:  LGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG

Query:  YKFDEFDRDSVNLR
        YKFDEFDRDSVNLR
Subjt:  YKFDEFDRDSVNLR

XP_038897625.1 RNA-binding protein 2-like isoform X1 [Benincasa hispida]3.7e-11799.06Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD TGLHELPNYY RQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY

Query:  KFDEFDRDSVNLR
        KFDEFDRDSVNLR
Subjt:  KFDEFDRDSVNLR

TrEMBL top hitse value%identityAlignment
A0A0A0L796 RRM domain-containing protein8.3e-11595.77Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDT+GLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY
        G+GGVVSGANVNDRSTSFGGGRPN+PLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQGY
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY

Query:  KFDEFDRDSVNLR
        KFDEFDRDSVNLR
Subjt:  KFDEFDRDSVNLR

A0A1S3C3F7 RNA-binding protein 2-like isoform X29.8e-11697.18Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQGY
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGY

Query:  KFDEFDRDSVNLR
        KFDEFDRDSVNLR
Subjt:  KFDEFDRDSVNLR

A0A6J1CHS7 RNA-binding protein 2-like isoform X11.7e-10788.79Show/hide
Query:  MKIIGPKKSMSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSY-GGQSARPVGGGVP
        M   G  +SMSDAYWRYTDSQQQPPS   AVVGKRPRVD+D+TG HELP+YYPRQDDR ++QGIKSVDSINESYERYLRSSQISSY GGQSARPV GGVP
Subjt:  MKIIGPKKSMSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSY-GGQSARPVGGGVP

Query:  GHSINDPPILGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHA
        GH +NDPPI+GIGGVVSGANVNDRS SFG GRPN+PLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRD VVLGFVDFVSPAHA
Subjt:  GHSINDPPILGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHA

Query:  ATAMDALQGYKFDEFDRDSVNLR
        ATAMDALQGYKFDEFDRDSVNLR
Subjt:  ATAMDALQGYKFDEFDRDSVNLR

A0A6J1E554 RNA-binding protein 2-like isoform X21.3e-11293.46Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIND-PPI
        MSDAYWRY+DSQQQPPSSVP+V GKRPRVDYDT+G H+LP+YYPRQDDRP+LQGIKSVDSINESYERYLRSS+ISSYGGQSARPVGGGVPGHSIND PPI
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIND-PPI

Query:  LGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG
        +GIGGVVSGANVNDRS SFGGGRPN+PLPPDASNTLFVEGLPSSCTRRE+AHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG
Subjt:  LGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG

Query:  YKFDEFDRDSVNLR
        YKFDEFDRDSVNLR
Subjt:  YKFDEFDRDSVNLR

A0A6J1J2D2 RNA-binding protein 2-like isoform X12.5e-11192.99Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIND-PPI
        MSDAYWRY+DSQQQPPSSVP+V GKRPRVDYDT+G H+LPNYYPRQDDRP+LQGIKSVDSINESYERYLRSS+ISSYG QSARPVGGGVPGHSIND PPI
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIND-PPI

Query:  LGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG
        +GIGGVVSGANVNDRS SFGGGRPN+PLPPDASNTLFVEGLPSSCTRRE+AHIFRPFVGYKEVRLVNKESRNPGRD VVLGFVDFVSPAHAATAMDALQG
Subjt:  LGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG

Query:  YKFDEFDRDSVNLR
        YKFDEFDRDSVNLR
Subjt:  YKFDEFDRDSVNLR

SwissProt top hitse value%identityAlignment
A1A6K6 Nuclear speckle RNA-binding protein A7.9e-3845.22Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD----TTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIN-
        M+D YW     Q  PP        KRPR D++    T  +     YYPR +D  V        +I  +Y+RYL+S Q    G  S    GGG  G   N 
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD----TTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIN-

Query:  ---DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAH
           D  +L  GGV+      N  +  F    P     LP DASNTL+VEGLPS+C+RREVAHIFRPFVGY+EVRLV K+S++   DP+VL FVDF +PA 
Subjt:  ---DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAH

Query:  AATAMDALQGYKFDEFDRDSVNLRWRASWK
        AATA+ ALQGY+ DE + DS  LR + S K
Subjt:  AATAMDALQGYKFDEFDRDSVNLRWRASWK

F4HWF9 Nuclear speckle RNA-binding protein B4.5e-3344.33Show/hide
Query:  ELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG----------GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------
        ++ +Y  + +DR +   +K   SI  +Y+RYL+S Q      + A P  G           +PG S+ +  + G GG + S    N R   FG       
Subjt:  ELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG----------GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------

Query:  GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLR
         GR   PLPPD SNTL+VEGLPS+C+RREV+HIFRPFVGY+EVRLV ++S++   DP VL FVDF + A AATA+ ALQ Y+ DE + DS  LR
Subjt:  GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLR

G7ID19 RNA-binding protein 26.2e-4344.44Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDT-----TGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVG--------G
        M+D +W     Q  PP   P  + KRPR +YDT     T  +E+ NY  + +   +L   K + S   +Y+R+L+S+ ++S+    A  +G        G
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDT-----TGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVG--------G

Query:  GVPGHSINDPPILG-IGGVVSGANV--NDRSTSFGG----------GRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGR
         +PGHS+ DP  +G + GV  G ++  N R  +FGG          G   IPLP DAS+TL+VEGLPS  T+REVAHIFRPFVGY+EVRLV KES++ G 
Subjt:  GVPGHSINDPPILG-IGGVVSGANV--NDRSTSFGG----------GRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGR

Query:  DPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLRWRAS
        DP++L FVDF +PA AATA+ ALQGYK DE + +S  LR + S
Subjt:  DPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLRWRAS

Q6JB11 Protein MATERNALLY EXPRESSED GENE 51.8e-2956.14Show/hide
Query:  GHSINDPPILGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHA
        G+ ++   ++G+ G      ++ R   + GGRP  PLPPDAS+TL++EGLP++CTRREV+HIFRPFVG++EVRLVNKESR+PG DP VL FVDF +PA A
Subjt:  GHSINDPPILGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHA

Query:  ATAMDALQGYKFDE
          A++ALQG+  D+
Subjt:  ATAMDALQGYKFDE

Q8H0P8 RNA-binding protein 19.3e-3944.44Show/hide
Query:  MSDAYWRYTDSQQQPPSSVP-AVVGKRPRVDYD--TTGL---HELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVG--------
        M+D YW    ++QQ  S +P + + KRPR DY+   +GL   +E+ +Y  R++DR     +K   +I  +Y+RYL+  Q+ S+    A  VG        
Subjt:  MSDAYWRYTDSQQQPPSSVP-AVVGKRPRVDYD--TTGL---HELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVG--------

Query:  GGVPGHSINDPPIL--GIGGVVSGANVNDRSTSFGGGRPNIP----------LPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGR
        GG+P HS++DP  +    GG       N R  ++G   P  P          LPPDAS TL++EGLPS CTRREVAHIFRPFVGY+EVRLV+KE+++ G 
Subjt:  GGVPGHSINDPPIL--GIGGVVSGANVNDRSTSFGGGRPNIP----------LPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGR

Query:  DPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLRWRAS
        DP++L FVDF +PA AATA+ ALQGYK DE + +S +LR + S
Subjt:  DPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLRWRAS

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding3.2e-3444.33Show/hide
Query:  ELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG----------GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------
        ++ +Y  + +DR +   +K   SI  +Y+RYL+S Q      + A P  G           +PG S+ +  + G GG + S    N R   FG       
Subjt:  ELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG----------GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------

Query:  GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLR
         GR   PLPPD SNTL+VEGLPS+C+RREV+HIFRPFVGY+EVRLV ++S++   DP VL FVDF + A AATA+ ALQ Y+ DE + DS  LR
Subjt:  GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLR

AT1G21320.2 nucleotide binding;nucleic acid binding1.9e-3943.22Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVV-GKRPRVDYDTTGL----HELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG--------
        M+D YW      Q P SS P V+  KRPR D+  T       ++ +Y  + +DR +   +K   SI  +Y+RYL+S Q      + A P  G        
Subjt:  MSDAYWRYTDSQQQPPSSVPAVV-GKRPRVDYDTTGL----HELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG--------

Query:  --GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPV
           +PG S+ +  + G GG + S    N R   FG        GR   PLPPD SNTL+VEGLPS+C+RREV+HIFRPFVGY+EVRLV ++S++   DP 
Subjt:  --GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPV

Query:  VLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLR
        VL FVDF + A AATA+ ALQ Y+ DE + DS  LR
Subjt:  VLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLR

AT1G76940.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.6e-3945.22Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD----TTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIN-
        M+D YW     Q  PP        KRPR D++    T  +     YYPR +D  V        +I  +Y+RYL+S Q    G  S    GGG  G   N 
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD----TTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIN-

Query:  ---DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAH
           D  +L  GGV+      N  +  F    P     LP DASNTL+VEGLPS+C+RREVAHIFRPFVGY+EVRLV K+S++   DP+VL FVDF +PA 
Subjt:  ---DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAH

Query:  AATAMDALQGYKFDEFDRDSVNLRWRASWK
        AATA+ ALQGY+ DE + DS  LR + S K
Subjt:  AATAMDALQGYKFDEFDRDSVNLRWRASWK

AT1G76940.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-2951.97Show/hide
Query:  GGQSARP-----VGGGVPGHSIN--DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNK
        GG   RP      GGG  G ++   D  +L  GGV+      N  +  F    P     LP DASNTL+VEGLPS+C+RREVAHIFRPFVGY+EVRLV K
Subjt:  GGQSARP-----VGGGVPGHSIN--DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNK

Query:  ESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLRWRASWK
        +S++   DP+VL FVDF +PA AATA+ ALQGY+ DE + DS  LR + S K
Subjt:  ESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLRWRASWK

AT2G47580.1 spliceosomal protein U1A3.3e-0734.48Show/hide
Query:  GGGRPNIP-LPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDE
        GG +PN+P  P   +N LFV+ LP   T   +  +F  + G+KEVR++  +   PG     + FV+F     +  AM  LQG+K  +
Subjt:  GGGRPNIP-LPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGGAGAGCCACCCTGCATCGAAGGTTATCTCGGGATAAACGCATTGAAGGCCGCAAGGCATTGGAAGTTGAAGGCCACGAGACCTAAACAACAGAGGGAGGTAAA
AGGAGATGTTCATGTCGATTTGGAGTGGAAATCTCGTCGTTACCGTGGGGGAAACTTGAGCTGGAGCAGAGGACTCAGTTGGTGTTATTCAATCAGAGTTGAAGAAGGAA
GAAGAAAGGAAGAAGGAAACTATTCTGCTGCAACAGTAGTATTGCTGAGAGAGCGAGAGACAGGGCAGCGAAACAAATGTCGCTGTAACGCAAGAGGGGTTTTGCGTCTC
ACAATTCTCACTGAAGTCTCGCTGGGTGTCGCTCCTCAGGCCAGGAAGAGCTCGGGGAGGCTTATAATCCACTTAGAGCTAAGACAAGTTGTAGCGAGCGTGTTCGAGAC
GCCTAGCCTACAGAAGTATCTCGTCTGGGCCTATCTTGAAGTAGACCTTTGGGATAGTTATGGTTTGAATGTATTATTAAATAAAATTTTATTCGAGTTCATTATCGATC
TTGGTCGAGATACAACTATGAAAATAATTGGCCCAAAAAAGAGCATGTCGGACGCTTATTGGAGGTACACCGACTCACAGCAGCAGCCTCCGTCGTCGGTTCCTGCCGTC
GTCGGCAAGCGCCCTCGCGTCGATTACGATACCACTGGTCTTCACGAGTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAGTGCTCCAAGGAATTAAAAGTGTTGA
TTCCATCAACGAGTCCTATGAACGTTACCTACGCAGCTCGCAAATTTCATCTTATGGTGGACAGTCTGCTAGACCTGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATG
ATCCACCTATATTGGGGATTGGGGGTGTGGTTTCAGGGGCTAATGTTAATGATAGAAGTACGAGCTTTGGAGGTGGGAGGCCTAACATACCCCTTCCACCTGATGCTTCT
AATACACTATTTGTGGAAGGCTTGCCTTCCAGCTGTACACGACGTGAAGTAGCTCACATATTCCGCCCTTTTGTTGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATC
CAGAAATCCTGGAAGAGATCCAGTGGTCCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCCATGGATGCCTTACAAGGTTATAAATTTGATGAGTTTG
ACCGTGACTCGGTCAATTTAAGGTGGCGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCACAGGATTTGCGCGTACGATTTTTCCTTTGGTCATTATTTTCGGCTAGT
GAGAATTTCGACTTGACAATATCCAGACAAGAAACCATCATTGCGAGTTTGAGGCATCTGCAATTTCTTGAGGGCAAGGAAAGGGTGAAATGTAGCTTAATTGCTCCAAC
ACGAAGCATCCTGAAGGCAGAAGAAGGAACATCAAAATTCTTCATGGAAAAATTGCCAACCGAAATCTGCCTGAAGATATTCTGTTTGTTGGATTCTCAGAACCTCGCAA
CCGCACTTCAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTATGGTCGAACTTATTCAAGGAGAGGTGGGGGGAAAACCATGCTGCATTTTATCACCCA
GTCGGTTCAAAGTCATGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTGGGCCTAAGAATTATCCGAGAAGGGAATGACTACTACCTCATTCACCA
AGGTGAAATCCAGAGGCACCTAGGATCAAGAAGACAAAAGAATGGACAGACGAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTCCTGTCAGAAGGACTTCTCGAAGAAG
ACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCGACGGATGCAAAGCGCAGCAGCAAGCGTCACCCTGGCAGCCTGAAA
CCTGCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGGAGAGCCACCCTGCATCGAAGGTTATCTCGGGATAAACGCATTGAAGGCCGCAAGGCATTGGAAGTTGAAGGCCACGAGACCTAAACAACAGAGGGAGGTAAA
AGGAGATGTTCATGTCGATTTGGAGTGGAAATCTCGTCGTTACCGTGGGGGAAACTTGAGCTGGAGCAGAGGACTCAGTTGGTGTTATTCAATCAGAGTTGAAGAAGGAA
GAAGAAAGGAAGAAGGAAACTATTCTGCTGCAACAGTAGTATTGCTGAGAGAGCGAGAGACAGGGCAGCGAAACAAATGTCGCTGTAACGCAAGAGGGGTTTTGCGTCTC
ACAATTCTCACTGAAGTCTCGCTGGGTGTCGCTCCTCAGGCCAGGAAGAGCTCGGGGAGGCTTATAATCCACTTAGAGCTAAGACAAGTTGTAGCGAGCGTGTTCGAGAC
GCCTAGCCTACAGAAGTATCTCGTCTGGGCCTATCTTGAAGTAGACCTTTGGGATAGTTATGGTTTGAATGTATTATTAAATAAAATTTTATTCGAGTTCATTATCGATC
TTGGTCGAGATACAACTATGAAAATAATTGGCCCAAAAAAGAGCATGTCGGACGCTTATTGGAGGTACACCGACTCACAGCAGCAGCCTCCGTCGTCGGTTCCTGCCGTC
GTCGGCAAGCGCCCTCGCGTCGATTACGATACCACTGGTCTTCACGAGTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAGTGCTCCAAGGAATTAAAAGTGTTGA
TTCCATCAACGAGTCCTATGAACGTTACCTACGCAGCTCGCAAATTTCATCTTATGGTGGACAGTCTGCTAGACCTGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATG
ATCCACCTATATTGGGGATTGGGGGTGTGGTTTCAGGGGCTAATGTTAATGATAGAAGTACGAGCTTTGGAGGTGGGAGGCCTAACATACCCCTTCCACCTGATGCTTCT
AATACACTATTTGTGGAAGGCTTGCCTTCCAGCTGTACACGACGTGAAGTAGCTCACATATTCCGCCCTTTTGTTGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATC
CAGAAATCCTGGAAGAGATCCAGTGGTCCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCCATGGATGCCTTACAAGGTTATAAATTTGATGAGTTTG
ACCGTGACTCGGTCAATTTAAGGTGGCGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCACAGGATTTGCGCGTACGATTTTTCCTTTGGTCATTATTTTCGGCTAGT
GAGAATTTCGACTTGACAATATCCAGACAAGAAACCATCATTGCGAGTTTGAGGCATCTGCAATTTCTTGAGGGCAAGGAAAGGGTGAAATGTAGCTTAATTGCTCCAAC
ACGAAGCATCCTGAAGGCAGAAGAAGGAACATCAAAATTCTTCATGGAAAAATTGCCAACCGAAATCTGCCTGAAGATATTCTGTTTGTTGGATTCTCAGAACCTCGCAA
CCGCACTTCAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTATGGTCGAACTTATTCAAGGAGAGGTGGGGGGAAAACCATGCTGCATTTTATCACCCA
GTCGGTTCAAAGTCATGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTGGGCCTAAGAATTATCCGAGAAGGGAATGACTACTACCTCATTCACCA
AGGTGAAATCCAGAGGCACCTAGGATCAAGAAGACAAAAGAATGGACAGACGAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTCCTGTCAGAAGGACTTCTCGAAGAAG
ACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCGACGGATGCAAAGCGCAGCAGCAAGCGTCACCCTGGCAGCCTGAAA
CCTGCTGCTTGA
Protein sequenceShow/hide protein sequence
MRGEPPCIEGYLGINALKAARHWKLKATRPKQQREVKGDVHVDLEWKSRRYRGGNLSWSRGLSWCYSIRVEEGRRKEEGNYSAATVVLLRERETGQRNKCRCNARGVLRL
TILTEVSLGVAPQARKSSGRLIIHLELRQVVASVFETPSLQKYLVWAYLEVDLWDSYGLNVLLNKILFEFIIDLGRDTTMKIIGPKKSMSDAYWRYTDSQQQPPSSVPAV
VGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPILGIGGVVSGANVNDRSTSFGGGRPNIPLPPDAS
NTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLRWRASWKALNYVISQDLRVRFFLWSLFSAS
ENFDLTISRQETIIASLRHLQFLEGKERVKCSLIAPTRSILKAEEGTSKFFMEKLPTEICLKIFCLLDSQNLATALQVCRKWNSLASDNILWSNLFKERWGENHAAFYHP
VGSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSSKRHPGSLK
PAA