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Clc05G11700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc05G11700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTranscription elongation factor 1 homolog
Genome locationClcChr05:9508269..9517136
RNA-Seq ExpressionClc05G11700
SyntenyClc05G11700
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7803378.1 transcription elongation factor 1-like protein [Senna tora]1.5e-4095.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI ALSE IDIYSEWIDECERVN LEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

XP_004146241.1 transcription elongation factor 1 homolog [Cucumis sativus]3.7e-4298.86Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN LEDDAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

XP_010090451.1 transcription elongation factor 1 homolog isoform X1 [Morus notabilis]9.1e-4195.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITAL+E IDIYSEWIDECERVN LEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

XP_015899142.1 transcription elongation factor 1 homolog [Ziziphus jujuba]3.1e-4196.59Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTITAL+EAIDIYSEWIDECERVNTLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

XP_038896920.1 transcription elongation factor 1 homolog [Benincasa hispida]2.2e-4295.56Show/hide
Query:  QEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
        Q+MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQESFSTTITALSEAID+YSEWIDECERVN LEDDAA
Subjt:  QEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

TrEMBL top hitse value%identityAlignment
A0A0A0LAG5 Transcription elongation factor 1 homolog1.8e-4298.86Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN LEDDAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

A0A1S3C2B7 Transcription elongation factor 1 homolog1.8e-4298.86Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN LEDDAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

A0A2P5DXC0 Transcription elongation factor 1 homolog1.3e-4093.18Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQESFSTT+TAL+E IDIYSEWIDECERVN LE+DAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

A0A6P4AU33 Transcription elongation factor 1 homolog1.5e-4196.59Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTITAL+EAIDIYSEWIDECERVNTLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

W9R774 Transcription elongation factor 1 homolog4.4e-4195.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITAL+E IDIYSEWIDECERVN LEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog1.6e-1953.66Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT LSE +D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN

P36053 Transcription elongation factor 19.2e-2052.44Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNT
        MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I +LS+ +D+YS+W D  E VN+
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNT

P60002 Transcription elongation factor 1 homolog1.6e-1953.66Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT LSE +D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN

Q8LEF3 Transcription elongation factor 1 homolog8.8e-3987.21Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTITAL+EAIDIYSEWIDECERVNT EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDD

Q8LHP0 Transcription elongation factor 1 homolog1.6e-4089.53Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDD
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+ AL+E IDIYSEWIDECERVN +EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDD

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein6.3e-4087.21Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTITAL+EAIDIYSEWIDECERVNT EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACAGAACGAAGTAAAGGTAAACGCAAAGAGTACAAACGGATAAAGGAAGGTCTTGAGTTGGATTTGGTTATCAAGGGGTTGTGTCCAACCGAGCTGACAGAGGA
ATATAAGTTGCCTTGCGTTCCAGACTTTAGAATGTTGCGTCCAAGAAGCTCGGGAAAGAGAATCAGAAGGAAGGAAAAGGAACTATCTTTGAGCAAATATTATATTGGAT
GGCGGGATCCAAAATTTGTGGTGAATTTGAGAAGGAATGAAGATGAGAGGAGAAATGGAGGGAGATCGAAGGAGGAGGAATCGAAGGGGTTGGGTGGGATTAGGGTTTCT
AATCGGCAAATGAGGAAAATAATGGAGACAGATGGGCAGACGAGAGGAGTAATGGCAGAAGGAGGAGTAGCAGAGAGAAATCGGAGAACGAGGAGTCCAAGGGAATCAGA
GAGAAGGAGAAGGAGAAGAATGAATGCGGAGAGAAGGCAACAGAGAGAGAGAGGAGATTTCGGGCAGAGTGTGCATGGGGAAGTGGCGGAAAACTATGGGAATGAAGGGA
AACAGGCGATCAGCCTTACGCTACAAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTC
TGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGCCTTGAG
TGAGGCAATTGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACACAGAACGAAGTAAAGGTAAACGCAAAGAGTACAAACGGATAAAGGAAGGTCTTGAGTTGGATTTGGTTATCAAGGGGTTGTGTCCAACCGAGCTGACAGAGGA
ATATAAGTTGCCTTGCGTTCCAGACTTTAGAATGTTGCGTCCAAGAAGCTCGGGAAAGAGAATCAGAAGGAAGGAAAAGGAACTATCTTTGAGCAAATATTATATTGGAT
GGCGGGATCCAAAATTTGTGGTGAATTTGAGAAGGAATGAAGATGAGAGGAGAAATGGAGGGAGATCGAAGGAGGAGGAATCGAAGGGGTTGGGTGGGATTAGGGTTTCT
AATCGGCAAATGAGGAAAATAATGGAGACAGATGGGCAGACGAGAGGAGTAATGGCAGAAGGAGGAGTAGCAGAGAGAAATCGGAGAACGAGGAGTCCAAGGGAATCAGA
GAGAAGGAGAAGGAGAAGAATGAATGCGGAGAGAAGGCAACAGAGAGAGAGAGGAGATTTCGGGCAGAGTGTGCATGGGGAAGTGGCGGAAAACTATGGGAATGAAGGGA
AACAGGCGATCAGCCTTACGCTACAAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTC
TGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGCCTTGAG
TGAGGCAATTGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAG
Protein sequenceShow/hide protein sequence
MDTERSKGKRKEYKRIKEGLELDLVIKGLCPTELTEEYKLPCVPDFRMLRPRSSGKRIRRKEKELSLSKYYIGWRDPKFVVNLRRNEDERRNGGRSKEEESKGLGGIRVS
NRQMRKIMETDGQTRGVMAEGGVAERNRRTRSPRESERRRRRRMNAERRQQRERGDFGQSVHGEVAENYGNEGKQAISLTLQEMGKRKSRAKPPPKKRMDKLDTVFSCPF
CNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA